Relating Attractors and Singular Steady States in the Logical Analysis of Bioregulatory Networks

DOI10.1007/978-3-540-73433-8_4MaRDI QIDQ5429348zbMATH OpenOpenAlexFDO

Authors Heike Siebert, Alexander Bockmayr

Publication date 29 November 2007

Published in Algebraic Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-540-73433-8_4

Mathematics Subject Classification ID

Applications of graph theory (05C90) General biology and biomathematics (92B05)

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Cited in

(13)

• Attractor analysis of asynchronous Boolean models of signal transduction networks
• On logical bifurcation diagrams
• Cyclic attractors of nonexpanding \(q\)-ary networks
• A qualitative analysis of ubiquitous regulatory motifs in \textit{Saccharomyces cerevisiae} genetic networks
• Local Structure and Behavior of Boolean Bioregulatory Networks
• Analysis and characterization of asynchronous state transition graphs using extremal states
• Bio-logics: logical analysis of bioregulatory networks
• Analysis of discrete bioregulatory networks using symbolic steady states
• R. Thomas' modeling of biological regulatory networks: Introduction of singular states in the qualitative dynamics
• Attractor Equivalence: An Observational Semantics for Reaction Networks
• Computational Methods in Systems Biology
• Deriving behavior of Boolean bioregulatory networks from subnetwork dynamics
• A compositional account of motifs, mechanisms, and dynamics in biochemical regulatory networks

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