Analysis and characterization of asynchronous state transition graphs using extremal states

DOI10.1007/S11538-012-9782-5MaRDI QIDQ371981zbMATH OpenOpenAlexWikidataFDO

Authors Therese Lorenz, Heike Siebert, Alexander Bockmayr

Publication date 11 October 2013

Published in Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s11538-012-9782-5

zbMATH Keywords

systems biologymodel reductionregulatory networksfinite dynamical systemslogical modelingThomas formalism

Mathematics Subject Classification ID

Applications of graph theory (05C90) Dynamical systems in biology (37N25) Systems biology, networks (92C42)

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Cites work

• scientific article; zbMATH DE number 50840 (Why is no real title available?)
• Analysis of discrete bioregulatory networks using symbolic steady states
• Behaviour Preservation of a Biological Regulatory Network when Embedded into a Larger Network
• Dynamically consistent reduction of logical regulatory graphs
• Embedding of biological regulatory networks and property preservation
• From structure to dynamics: frequency tuning in the p53-Mdm2 network. I: Logical approach
• Graphic requirements for multistability and attractive cycles in a Boolean dynamical framework
• Mapping multivalued onto Boolean dynamics
• Maximum number of fixed points in regulatory Boolean networks
• Multistationarity, the basis of cell differentiation and memory. II: Logical analysis of regulatory networks in terms of feedback circuits
• Reduction of Boolean network models
• Uncovering operational interactions in genetic networks using asynchronous Boolean dynamics

Cited in

(3)

• Attractor computation using interconnected Boolean networks: testing growth rate models in \textit{E. coli}
• Computational Methods in Systems Biology
• Dynamical modeling and analysis of large cellular regulatory networks

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