Multiple DNA and protein sequence alignment based on segment-to-segment comparison.

DOI10.1073/PNAS.93.22.12098zbMATH Open0862.92018OpenAlexW2052831012WikidataQ37225464 ScholiaQ37225464MaRDI QIDQ5690790FDOQ5690790

Authors: B. Morgenstern, Andreas W. M. Dress, Thomas Werner 

Publication date: 4 June 1997

Published in: Proceedings of the National Academy of Sciences (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1073/pnas.93.22.12098

Recommendations

• Multiple protein sequence alignment using double-dynamic programming
• Multiple sequence comparison -- a peptide matching approach
• Publication:4731046
• Sequence Alignments with Matched Sections
• A multiple sequence comparison method

zbMATH Keywords

DNA sequencesdynamic programmingsequence similarityprotein sequencesmultiple alignmentsalignment algorithmconsistent equivalence relationsfragment comparisonfunctional-site identificationpartial alignmentsribonucleasesegment-to-segment comparison

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Cited In (20)

• A NEW MIDDLE PATH APPROACH FOR ALIGNMENTS IN BLAST
• Magnus representation of genome sequences
• A scheme for multiple sequence alignment optimization -- an improvement based on family representative mechanics features
• Four billion years: the story of an ancient protein family
• A path selection approach to global pairwise sequence alignment using integer linear optimization†
• A simple and space-efficient fragment-chaining algorithm for alignment of DNA and protein sequences
• The number of standard and of effective multiple alignments
• Global pairwise sequence alignment through mixed-integer linear programming: a template-free approach
• Extracting approximate patterns
• Pairwise sequence alignment revisited -- genetic algorithms and cosine functions
• Multiple alignment of biological sequences with gap flexibility
• Multiple protein sequence alignment using double-dynamic programming
• A polyhedral approach to sequence alignment problems
• New method for global alignment of 2 DNA sequences by the tree data structure
• Multiple sequence alignment using external sources of information
• Phase-only filtering for the masses (of DNA Data): a new approach to sequence alignment
• A protein coding gene alignment algorithm based on SPA
• Compositional properties of alignments
• Pattern-constrained multiple polypeptide sequence alignment
• Protein sequence alignment taking the structure of peptide bond

This page was built for publication: Multiple DNA and protein sequence alignment based on segment-to-segment comparison.

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q5690790)