On Joint Estimation of Gaussian Graphical Models for Spatial and Temporal Data
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Publication:6079972
DOI10.1111/BIOM.12650zbMATH Open1522.62179arXiv1507.01933OpenAlexW2963357428WikidataQ31155259 ScholiaQ31155259MaRDI QIDQ6079972FDOQ6079972
Authors: Zhixiang Lin, Tao Wang, Can Yang, Hongyu Zhao 
Publication date: 30 October 2023
Published in: Biometrics (Search for Journal in Brave)
Abstract: In this paper, we first propose a Bayesian neighborhood selection method to estimate Gaussian Graphical Models (GGMs). We show the graph selection consistency of this method in the sense that the posterior probability of the true model converges to one. When there are multiple groups of data available, instead of estimating the networks independently for each group, joint estimation of the networks may utilize the shared information among groups and lead to improved estimation for each individual network. Our method is extended to jointly estimate GGMs in multiple groups of data with complex structures, including spatial data, temporal data and data with both spatial and temporal structures. Markov random field (MRF) models are used to efficiently incorporate the complex data structures. We develop and implement an efficient algorithm for statistical inference that enables parallel computing. Simulation studies suggest that our approach achieves better accuracy in network estimation compared with methods not incorporating spatial and temporal dependencies when there are shared structures among the networks, and that it performs comparably well otherwise. Finally, we illustrate our method using the human brain gene expression microarray dataset, where the expression levels of genes are measured in different brain regions across multiple time periods.
Full work available at URL: https://arxiv.org/abs/1507.01933
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Gaussian graphical modelBayesian variable selectionMarkov random fieldneighborhood selectionspatial and temporal data
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Cited In (13)
- Joint Gaussian graphical model estimation: a survey
- Nonparametric Bayesian learning of heterogeneous dynamic transcription factor networks
- Bayesian Edge Regression in Undirected Graphical Models to Characterize Interpatient Heterogeneity in Cancer
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