On Joint Estimation of Gaussian Graphical Models for Spatial and Temporal Data
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Publication:6079972
Abstract: In this paper, we first propose a Bayesian neighborhood selection method to estimate Gaussian Graphical Models (GGMs). We show the graph selection consistency of this method in the sense that the posterior probability of the true model converges to one. When there are multiple groups of data available, instead of estimating the networks independently for each group, joint estimation of the networks may utilize the shared information among groups and lead to improved estimation for each individual network. Our method is extended to jointly estimate GGMs in multiple groups of data with complex structures, including spatial data, temporal data and data with both spatial and temporal structures. Markov random field (MRF) models are used to efficiently incorporate the complex data structures. We develop and implement an efficient algorithm for statistical inference that enables parallel computing. Simulation studies suggest that our approach achieves better accuracy in network estimation compared with methods not incorporating spatial and temporal dependencies when there are shared structures among the networks, and that it performs comparably well otherwise. Finally, we illustrate our method using the human brain gene expression microarray dataset, where the expression levels of genes are measured in different brain regions across multiple time periods.
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- Network modeling in biology: statistical methods for gene and brain networks
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- Multiple and multilevel graphical models
- Nonparametric Bayesian learning of heterogeneous dynamic transcription factor networks
- Bayesian joint modeling of multiple brain functional networks
- Joint Gaussian graphical model estimation: a survey
- Joint estimation of multiple mixed graphical models for pan-cancer network analysis
- Joint estimation of multiple graphical models from high dimensional time series
- Estimating heterogeneous gene regulatory networks from zero-inflated single-cell expression data
- On High-Dimensional Constrained Maximum Likelihood Inference
- Covariate-Assisted Bayesian Graph Learning for Heterogeneous Data
- A Bayesian Subset Specific Approach to Joint Selection of Multiple Graphical Models
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