Combined Newton-gradient method for constrained root-finding in chemical reaction networks
DOI10.1007/s10957-023-02323-zarXiv2212.14252OpenAlexW4389744807MaRDI QIDQ6142077
Federico Benvenuto, Sara Sommariva, Silvia Berra, Alessandro La Torraca
Publication date: 25 January 2024
Published in: Journal of Optimization Theory and Applications (Search for Journal in Brave)
Full work available at URL: https://arxiv.org/abs/2212.14252
chemical reaction networknonnegative constraintsbox-constrained optimizationprojected gradient descentprojected Newton's method
Numerical optimization and variational techniques (65K10) Numerical methods for initial value problems involving ordinary differential equations (65L05)
Cites Work
- Reaction network realizations of rational biochemical systems and their structural properties
- A family of embedded Runge-Kutta formulae
- Convergence of the gradient projection method for generalized convex minimization
- Projected Barzilai-Borwein methods for large-scale box-constrained quadratic programming
- A globalization procedure for solving nonlinear systems of equations
- The existence and uniqueness of steady states for a class of chemical reaction networks
- Quadratic vector equations
- Steplength selection in gradient projection methods for box-constrained quadratic programs
- An interior point-proximal method of multipliers for convex quadratic programming
- Gain and loss of function mutations in biological chemical reaction networks: a mathematical model with application to colorectal cancer cells
- Using gradient directions to get global convergence of Newton-type methods
- Cubic regularization of Newton method and its global performance
- The MATLAB ODE Suite
- CONOPT: A GRG code for large sparse dynamic nonlinear optimization problems
- Sensitivity and Robustness in Chemical Reaction Networks
- Phase Portraits of Planar Quadratic Systems
- New convergence results for the scaled gradient projection method
- A scaled gradient projection method for constrained image deblurring
- Adaptive Barrier Update Strategies for Nonlinear Interior Methods
- Two-Point Step Size Gradient Methods
- A Two-Phase Gradient Method for Quadratic Programming Problems with a Single Linear Constraint and Bounds on the Variables
- Optimality Conditions via Norm Scalarization in Vector Optimization
- Projected Newton Methods for Optimization Problems with Simple Constraints
- Machine Learning Refined
- On the convergence of a linesearch based proximal-gradient method for nonconvex optimization
- Globalization technique for projected Newton–Krylov methods
- SNOPT: An SQP Algorithm for Large-Scale Constrained Optimization
- Line Search Filter Methods for Nonlinear Programming: Motivation and Global Convergence
- Gradient projection methods for quadratic programs and applications in training support vector machines
- Modeling and analysis of mass-action kinetics
- Convex programming in Hilbert space
- Unnamed Item
- Unnamed Item
This page was built for publication: Combined Newton-gradient method for constrained root-finding in chemical reaction networks