A Bayesian approach for inferring neuronal connectivity from calcium fluorescent imaging data

DOI10.1214/09-AOAS303zbMath1223.62162arXiv1107.4228MaRDI QIDQ641075

Liam Paninski, Joshua T. Vogelstein, Yuriy Mishchenko

Publication date: 21 October 2011

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1107.4228

zbMATH Keywords

point process; sequential Monte Carlo; generalized linear model; Metropolis-Hastings; spike train data

Mathematics Subject Classification ID

62P10: Applications of statistics to biology and medical sciences; meta analysis

62F15: Bayesian inference

65C05: Monte Carlo methods

92C20: Neural biology

92C55: Biomedical imaging and signal processing

Related Items

Unnamed Item, Unnamed Item, Unnamed Item, Reconstruction of sparse recurrent connectivity and inputs from the nonlinear dynamics of neuronal networks, Adaptive importance sampling for control and inference, Efficient methods for sampling spike trains in networks of coupled neurons, Learning neural connectivity from firing activity: efficient algorithms with provable guarantees on topology, Fast state-space methods for inferring dendritic synaptic connectivity, Reconstruction of recurrent synaptic connectivity of thousands of neurons from simulated spiking activity, Consistent estimation of complete neuronal connectivity in large neuronal populations using sparse ``shotgun neuronal activity sampling, Scalpel: extracting neurons from calcium imaging data, Reconstruction of sparse connectivity in neural networks from spike train covariances

Uses Software

• astsa

Cites Work

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• A mathematical framework for inferring connectivity in probabilistic neuronal networks
• Maximum likelihood analysis of spike trains of interacting nerve cells
• Maximum likelihood identification of neural point process systems
• Regression analysis under link violation
• Sequential Monte Carlo Methods in Practice
• Efficient Markov Chain Monte Carlo Methods for Decoding Neural Spike Trains
• Particle Markov Chain Monte Carlo for Efficient Numerical Simulation
• Markov chain Monte Carlo for dynamic generalised linear models
• 10.1162/15324430152748236
• Revealing Pairwise Coupling in Linear-Nonlinear Networks
• Optimally sparse representation in general (nonorthogonal) dictionaries via ℓ ¹ minimization
• Monte Carlo Smoothing for Nonlinear Time Series
• Bayesian modelling and analysis of spatio-temporal neuronal networks