A Bayesian approach for inferring neuronal connectivity from calcium fluorescent imaging data

DOI10.1214/09-AOAS303zbMath1223.62162arXiv1107.4228MaRDI QIDQ641075

Liam Paninski, Joshua T. Vogelstein, Yuriy Mishchenko

Publication date: 21 October 2011

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1107.4228

zbMATH Keywords

point processsequential Monte Carlogeneralized linear modelMetropolis-Hastingsspike train data

Mathematics Subject Classification ID

Related Items (13)

Adaptive importance sampling for control and inference ⋮ Learning neural connectivity from firing activity: efficient algorithms with provable guarantees on topology ⋮ Detecting cell assemblies by NMF-based clustering from calcium imaging data ⋮ Reconstruction of sparse recurrent connectivity and inputs from the nonlinear dynamics of neuronal networks ⋮ Fast state-space methods for inferring dendritic synaptic connectivity ⋮ Reconstruction of recurrent synaptic connectivity of thousands of neurons from simulated spiking activity ⋮ Consistent estimation of complete neuronal connectivity in large neuronal populations using sparse ``shotgun neuronal activity sampling ⋮ Efficient methods for sampling spike trains in networks of coupled neurons ⋮ Scalpel: extracting neurons from calcium imaging data ⋮ Reconstruction of sparse connectivity in neural networks from spike train covariances ⋮ Unnamed Item ⋮ Unnamed Item ⋮ Unnamed Item

Uses Software

• astsa

Cites Work

• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• A mathematical framework for inferring connectivity in probabilistic neuronal networks
• Maximum likelihood analysis of spike trains of interacting nerve cells
• Maximum likelihood identification of neural point process systems
• Regression analysis under link violation
• Sequential Monte Carlo Methods in Practice
• Efficient Markov Chain Monte Carlo Methods for Decoding Neural Spike Trains
• Particle Markov Chain Monte Carlo for Efficient Numerical Simulation
• Markov chain Monte Carlo for dynamic generalised linear models
• 10.1162/15324430152748236
• Revealing Pairwise Coupling in Linear-Nonlinear Networks
• Optimally sparse representation in general (nonorthogonal) dictionaries via ℓ ¹ minimization
• Monte Carlo Smoothing for Nonlinear Time Series
• Bayesian modelling and analysis of spatio-temporal neuronal networks

This page was built for publication: A Bayesian approach for inferring neuronal connectivity from calcium fluorescent imaging data