Multiscale Poisson process approaches for detecting and estimating differences from high-throughput sequencing assays

DOI10.1214/23-AOAS1828MaRDI QIDQ6616319zbMATH OpenFDO

Authors Heejung Shim, Zhengrong Xing, Ester Pantaleo, Francesca Luca, Roger Pique-Regi, Matthew Stephens

Publication date 9 October 2024

Published in The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1214/23-AOAS1828

zbMATH Keywords

ATAC-seqBayesian inferencechromatin accessibilitycount datadifferential expression analysisdnase-seqfunctional datahigh-resolutionhigh-throughput sequencing assaysmultiscale Poisson processesRNA-seqwavelets

Mathematics Subject Classification ID

Applications of statistics (62Pxx)

Cites work

• Adapting to Unknown Smoothness via Wavelet Shrinkage
• Analysis of Distributional Variation Through Graphical Multi-Scale Beta-Binomial Models
• Bayesian Analysis of Mass Spectrometry Proteomic Data Using Wavelet-Based Functional Mixed Models
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• Flexible signal denoising via flexible empirical Bayes shrinkage
• scientific article; zbMATH DE number 802858 (Why is no real title available?)
• Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments
• Multiscale modeling and estimation of Poisson processes with application to photon-limited imaging
• Wavelet-based genetic association analysis of functional phenotypes arising from high-throughput sequencing assays

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