Wavelet-based genetic association analysis of functional phenotypes arising from high-throughput sequencing assays

DOI10.1214/14-AOAS776zbMath1397.62473arXiv1307.7203WikidataQ49298765 ScholiaQ49298765MaRDI QIDQ746652

Heejung Shim, Matthew Stephens

Publication date: 28 October 2015

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1307.7203

zbMATH Keywords

waveletshierarchical modelBayesian inferenceRNA-seqfunctional dataDNase-seqChIP-seqchromatin accessibilitygenetic association analysishigh-throughput sequencing assays

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Nontrigonometric harmonic analysis involving wavelets and other special systems (42C40) Bayesian inference (62F15) Protein sequences, DNA sequences (92D20)

Related Items

Flexible Modelling of Genetic Effects on Function-Valued Traits ⋮ Wavelet-based genetic association analysis of functional phenotypes arising from high-throughput sequencing assays ⋮ Analysis of Distributional Variation Through Graphical Multi-Scale Beta-Binomial Models

Uses Software

• qvalue
• WaveSeq
• ChIP-PaM

Cites Work

• Unnamed Item
• Wavelet-based genetic association analysis of functional phenotypes arising from high-throughput sequencing assays
• Estimation and inference in functional mixed-effects models
• Embedding of 2-dimensional cell complexes in \(S^ 3\) determined by their 1-skeletons
• Testing in mixed-effects FANOVA models
• Fast Wavelet Based Functional Models for Transcriptome Analysis with Tiling Arrays
• Robust, Adaptive Functional Regression in Functional Mixed Model Framework
• Adapting to Unknown Smoothness via Wavelet Shrinkage
• Wavelet-based Functional Mixed Models
• A theory for multiresolution signal decomposition: the wavelet representation
• Bayesian Analysis of Mass Spectrometry Proteomic Data Using Wavelet-Based Functional Mixed Models
• Wavelet-Based Nonparametric Functional Mapping of Longitudinal Curves
• Test of Significance When Data Are Curves
• Bayesian Multiscale Models for Poisson Processes
• Multiscale modeling and estimation of Poisson processes with application to photon-limited imaging
• Bayesian Analysis for the Social Sciences

This page was built for publication: Wavelet-based genetic association analysis of functional phenotypes arising from high-throughput sequencing assays