A dynamical low-rank approach to the chemical master equation
From MaRDI portal
Publication:839950
DOI10.1007/S11538-008-9346-XzbMATH Open1169.92021OpenAlexW2014645774WikidataQ51870898 ScholiaQ51870898MaRDI QIDQ839950FDOQ839950
Tobias Jahnke, Wilhelm Huisinga
Publication date: 4 September 2009
Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1007/s11538-008-9346-x
Recommendations
- An Adaptive Method for Solving Chemical Master Equations using a Sparse Wavelet Basis
- Multiscale Modeling of Chemical Kinetics via the Master Equation
- Solving chemical master equations by an adaptive wavelet method
- Hybrid method for the chemical master equation
- On reduced models for the chemical master equation
chemical master equationDirac-Frenkel-McLachlan variational principledynamical low-rank approximationgenetic toggle switchlambda phagestochastic reaction kinetics
Applications of stochastic analysis (to PDEs, etc.) (60H30) Cell biology (92C37) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45)
Cites Work
- A Multilinear Singular Value Decomposition
- Geometric Numerical Integration
- Numerical methods for strong solutions of stochastic differential equations: an overview
- Computational treatment of polyreaction kinetics by orthogonal polynomials of a discrete variable
- Handbook of stochastic methods for physics, chemistry and the natural sciences.
- Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems
- A multiple time interval finite state projection algorithm for the solution to the chemical master equation
- Multiscale Modeling of Chemical Kinetics via the Master Equation
- Adaptive Discrete Galerkin Methods Applied to the Chemical Master Equation
- Solving the chemical master equation for monomolecular reaction systems analytically
- Adaptive simulation of hybrid stochastic and deterministic models for biochemical systems
- Dynamical low-rank approximation: Applications and numerical experiments
- On variational approximations in quantum molecular dynamics
- Dynamical Low‐Rank Approximation
- Computing the moments of high dimensional solutions of the master equation
- A variational splitting integrator for quantum molecular dynamics.
- A solver for the stochastic master equation applied to gene regulatory networks
Cited In (34)
- Tensor Approximation of Stationary Distributions of Chemical Reaction Networks
- Adaptive solution of the master equation in low dimensions
- Multiscale Modeling of Chemical Kinetics via the Master Equation
- Adaptive Discrete Galerkin Methods Applied to the Chemical Master Equation
- Dynamical low-rank approximation: Applications and numerical experiments
- Bayesian learning of effective chemical master equations in crowded intracellular conditions
- A Low-Rank Projector-Splitting Integrator for the Vlasov--Poisson Equation
- From low-rank retractions to dynamical low-rank approximation and back
- Time evolution in the unimolecular master equation at low temperatures: Full spectral solution with scalable iterative methods and high precision
- Computing the moments of high dimensional solutions of the master equation
- The Poisson representation. I: A new technique for chemical master equations
- A Low-Rank Algorithm for Weakly Compressible Flow
- A dynamical low-rank approach to solve the chemical master equation for biological reaction networks
- A robust second-order low-rank BUG integrator based on the midpoint rule
- Projection methods for dynamical low-rank approximation of high-dimensional problems
- Solving the master equation without kinetic Monte Carlo: tensor train approximations for a CO oxidation model
- A tensor decomposition algorithm for large ODEs with conservation laws
- Nearest-neighbor interaction systems in the tensor-train format
- A Quasi-Conservative Dynamical Low-Rank Algorithm for the Vlasov Equation
- Markovian dynamics on complex reaction networks
- Nonlinear chemical dynamics in low dimensions: An exactly soluble model
- Tensor product approach to modelling epidemics on networks
- Extending the multi-level method for the simulation of stochastic biological systems
- Solving the chemical master equation for monomolecular reaction systems and beyond: a Doi-Peliti path integral view
- Solving the chemical master equation for monomolecular reaction systems analytically
- On compact vector formats in the solution of the chemical master equation with backward differentiation
- A literature survey of low-rank tensor approximation techniques
- A Predictor-Corrector Strategy for Adaptivity in Dynamical Low-Rank Approximations
- Simultaneous state-time approximation of the chemical master equation using tensor product formats
- Spectral approximation of solutions to the chemical master equation
- Solving chemical master equations by adaptive wavelet compression
- Radial basis function collocation for the chemical master equation
- The geometry of algorithms using hierarchical tensors
- Accelerating the simulation of kinetic shear Alfvén waves with a dynamical low-rank approximation
This page was built for publication: A dynamical low-rank approach to the chemical master equation
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q839950)
