Intracellular delay limits cyclic changes in gene expression

DOI10.1016/J.MBS.2006.08.010zbMATH Open1109.92014arXivq-bio/0602009OpenAlexW2011272261WikidataQ51931570 ScholiaQ51931570MaRDI QIDQ876051FDOQ876051

Authors: Katja Rateitschak, Olaf Wolkenhauer 

Publication date: 16 April 2007

Published in: Mathematical Biosciences (Search for Journal in Brave)

Abstract: Based on previously published experimental observations and mathematical models for Hes1, p53 and NF-kB gene expression, we improve these models through a distributed delay formulation of the time lag between transcription factor binding and mRNA production. This description of natural variability for delays introduces a transition from a stable steady state to limit cycle oscillations and then a second transition back to a stable steady state which has not been observed in previously published models. On the basis of our results and following recent discussions about the role of delay-induced oscillations in gene transcription we establish the hypothesis that the period of the delay-induced cyclic changes should be characterized by an upper bound so that it cannot be greater then the period of fundamental biological cycles. We demonstrate our approach for two models. The first model describes Hes1 autorepression with equations for Hes1 mRNA production and Hes1 protein translation. The second model describes Hes1 repression by the protein complex Gro/TLE1/Hes1, where Gro/TLE1 is activated by Hes1 phosphorylation.

Full work available at URL: https://arxiv.org/abs/q-bio/0602009

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zbMATH Keywords

distributed time delaylimit cycle oscillationsgene expression with negative feedback

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Qualitative investigation and simulation of models involving functional-differential equations (34K60)

Cites Work

• Introduction to functional differential equations
• The Poincaré-Bendixson theorem for monotone cyclic feedback systems
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Cited In (12)

• Stability and Bifurcation Analysis of Cyclic Genetic Regulatory Networks with Mixed Time Delays
• Optimal linear stability condition for scalar differential equations with distributed delay
• Fokker-Planck equations for time-delayed systems via Markovian embedding
• Modelling transcriptional feedback loops: the role of Gro/TLE1 in Hes1 oscillations
• Stability and Hopf bifurcation in a model of gene expression with distributed time delays
• The stability and Hopf bifurcation analysis of a gene expression model
• Stability of genetic regulatory networks based on switched systems and mixed time-delays
• Stochastic P-Bifurcation in a Delayed Myc/E2F/miR-17-92 Network
• Title not available (Why is that?)
• Periodic oscillation in delayed gene networks with SUM regulatory logic and small perturba\-tions
• A delay stochastic process with applications in molecular biology
• Oscillations and bistability in the stochastic model of p53 regulation

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