Modeling epigenetic modifications under multiple treatment conditions

DOI10.1016/J.CSDA.2009.09.035MaRDI QIDQ962370zbMATH OpenOpenAlexFDO

Authors B. E. Eshmatov

Publication date 6 April 2010

Published in Computational Statistics and Data Analysis (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.csda.2009.09.035

Mathematics Subject Classification ID

Computational methods for problems pertaining to statistics (62-08) Density estimation (62G07) Applications of statistics to biology and medical sciences; meta analysis (62P10)

Recommendations

• Efficient detection and classification of epigenomic changes under multiple conditions
• Prediction of gene expression level based on generalized linear model
• Incorporating genomic annotation into a hidden Markov model for DNA methylation tiling array data
• Improved detection of epigenomic marks with mixed-effects hidden Markov models
• Change point analysis of histone modifications reveals epigenetic blocks linking to physical domains

Cites work

• A Flexible and Powerful Bayesian Hierarchical Model for ChIP-Chip Experiments
• A nonparametric regression estimator that adapts to error distribution of unknown form
• An Effective Bandwidth Selector for Local Least Squares Regression
• ChIP‐chip: Data, Model, and Analysis
• Efficient Estimation and Inferences for Varying-Coefficient Models
• Efficient estimation of conditional variance functions in stochastic regression
• Fast and simple scatterplot smoothing
• Functional-Coefficient Regression Models for Nonlinear Time Series
• scientific article; zbMATH DE number 991833 (Why is no real title available?)
• scientific article; zbMATH DE number 472973 (Why is no real title available?)
• scientific article; zbMATH DE number 720689 (Why is no real title available?)
• scientific article; zbMATH DE number 720755 (Why is no real title available?)
• scientific article; zbMATH DE number 847282 (Why is no real title available?)
• scientific article; zbMATH DE number 854585 (Why is no real title available?)
• scientific article; zbMATH DE number 889595 (Why is no real title available?)
• Local Polynomial Variance-Function Estimation
• Mixture Modeling for Genome‐Wide Localization of Transcription Factors
• Permutation methods. A distance function approach
• Quadratic Inference Functions for Varying‐Coefficient Models with Longitudinal Data
• Statistical estimation in varying coefficient models

Cited in

(5)

• A model for hepatocarcinogenesis treating phenotypical changes in focal hepatocellular lesions as epigenetic events
• Prediction of gene expression level based on generalized linear model
• Validation in Genomics: CpG Island Methylation Revisited
• Physical modeling of the spreading of epigenetic modifications through transient DNA looping
• Efficient detection and classification of epigenomic changes under multiple conditions

Describes a project that uses

Uses Software

• KernSmooth
• TileMap

This page was built for publication: Modeling epigenetic modifications under multiple treatment conditions

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q962370)