Redefining CpG islands using hidden Markov models
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Recommendations
- Identifying \(\mathrm{CpG}\) islands: sliding window and hidden Markov model approaches
- Determining coding CpG islands by identifying regions significant for pattern statistics on Markov chains
- HMM-Fisher: identifying differential methylation using a hidden Markov model and Fisher's exact test
- HMM-DM: identifying differentially methylated regions using a hidden Markov model
- Integrating prior knowledge in multiple testing under dependence with applications to detecting differential DNA methylation
Cites work
- A Bayesian Approach to DNA Sequence Segmentation
- Biological Sequence Analysis
- scientific article; zbMATH DE number 5726954 (Why is no real title available?)
- scientific article; zbMATH DE number 3567782 (Why is no real title available?)
- scientific article; zbMATH DE number 1489817 (Why is no real title available?)
- Stochastic models for heterogeneous DNA sequences
Cited in
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