sJIVE: supervised joint and individual variation explained

DOI10.1016/J.CSDA.2022.107547MaRDI QIDQ2674488zbMATH OpenOpenAlexFDO

Authors Elise F. Palzer, C. H. Wendt, Russell P. Bowler, Craig P. Hersh, Sandra E. Safo, Eric F. Lock

Publication date 14 September 2022

Published in Computational Statistics and Data Analysis (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/2102.13278

zbMATH Keywords

data integrationdimension reductiongenomic datahigh-dimensional predictionmulti-source datamulti-view learning

Mathematics Subject Classification ID

Statistics (62-XX)

Recommendations

• Joint and individual variation explained (JIVE) for integrated analysis of multiple data types
• Angle-based joint and individual variation explained
• Incorporating covariates into integrated factor analysis of multi-view data
• Structural learning and integrative decomposition of multi-view data
• Sparse linear discriminant analysis for multiview structured data

Cites work

• Angle-based joint and individual variation explained
• Extensions of sparse canonical correlation analysis with applications to genomic data
• Incorporating covariates into integrated factor analysis of multi-view data
• Joint and individual variation explained (JIVE) for integrated analysis of multiple data types
• Prediction by Supervised Principal Components
• RELATIONS BETWEEN TWO SETS OF VARIATES
• Sparse canonical correlation analysis from a predictive point of view
• Structural learning and integrative decomposition of multi-view data
• Sufficient Canonical Correlation Analysis

Cited in

(10)

• Integrative sparse reduced-rank regression via orthogonal rotation for analysis of high-dimensional multi-source data
• Jackstraw inference for AJIVE data integration
• Bayesian predictive modeling of multi-source multi-way data
• Bayesian simultaneous factorization and prediction using multi-omic data
• Joint modeling of an outcome variable and integrated omics datasets using GLM-PO2PLS
• Joint and Individual Component Regression
• A spectral framework for multi-view subspace learning using the product of projections
• Bayesian joint additive factor models for multiview learning
• A tutorial on Bayesian multi-study factor analysis with applications in nutrition and genomics
• Simultaneous representation learning of multi-omics and clinical outcome data via a supervised knowledge-guided Bayesian factor model

Describes a project that uses

Uses Software

• JIVE
• PMA

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