| Publication | Date of Publication | Type |
|---|
Mean field limits of particle-based stochastic reaction-drift-diffusion models
(available as arXiv preprint) | N/A | Paper |
An Unstructured Mesh Reaction-Drift-Diffusion Master Equation with Reversible Reactions
(available as arXiv preprint) | N/A | Paper |
A Convergent Reaction-Drift-Diffusion Master Equation with Interaction Potentials
(available as arXiv preprint) | 2026-09-09 | Paper |
A macroscopically consistent reactive Langevin dynamics model
SIAM Journal on Applied Mathematics | 2026-03-11 | Paper |
Mean field limits of particle-based stochastic reaction-drift-diffusion models
Nonlinearity | 2025-01-22 | Paper |
An unstructured mesh reaction-drift-diffusion master equation with reversible reactions
Bulletin of Mathematical Biology | 2025-01-13 | Paper |
Extending JumpProcesses.jl for fast point process simulation with time-varying intensities
JuliaCon Proceedings | 2024-04-23 | Paper |
Fluctuation analysis for particle-based stochastic reaction-diffusion models
Stochastic Processes and their Applications | 2024-01-09 | Paper |
Catalyst: Fast and flexible modeling of reaction networks
PLOS Computational Biology | 2023-10-18 | Paper |
Mean field limits of particle-based stochastic reaction-diffusion models
SIAM Journal on Mathematical Analysis | 2022-01-27 | Paper |
How reaction-diffusion PDEs approximate the large-population limit of stochastic particle models
SIAM Journal on Applied Mathematics | 2021-12-24 | Paper |
How reaction-diffusion PDEs approximate the large-population limit of stochastic particle models
(available as arXiv preprint) | 2020-09-02 | Paper |
Accurate Particle-Based Reaction Algorithms for Fixed Timestep Simulators
2018 MATRIX Annals | 2020-08-27 | Paper |
An unstructured mesh convergent reaction-diffusion master equation for reversible reactions
Journal of Computational Physics | 2019-07-04 | Paper |
A first-passage kinetic Monte Carlo method for reaction-drift-diffusion processes
Journal of Computational Physics | 2016-12-05 | Paper |
Reactive boundary conditions as limits of interaction potentials for Brownian and Langevin dynamics
SIAM Journal on Applied Mathematics | 2016-03-04 | Paper |
A comparison of bimolecular reaction models for stochastic reaction-diffusion systems
Bulletin of Mathematical Biology | 2014-10-08 | Paper |
The influence of spatial variation in chromatin density determined by X-ray tomograms on the time to find DNA binding sites
Bulletin of Mathematical Biology | 2014-03-20 | Paper |
The influence of spatial variation in chromatin density determined by X-ray tomograms on the time to find DNA binding sites
Bulletin of Mathematical Biology | 2014-03-20 | Paper |
| A Convergent Reaction-Diffusion Master Equation | 2012-11-28 | Paper |
Numerical solution of linear Volterra integral equations of the second kind with sharp gradients
Journal of Computational and Applied Mathematics | 2011-06-28 | Paper |
The reaction-diffusion master equation as an asymptotic approximation of diffusion to a small target
SIAM Journal on Applied Mathematics | 2010-03-17 | Paper |
A microfluidic pumping mechanism driven by non-equilibrium osmotic effects
Physica D | 2009-08-12 | Paper |
Relationship between the reaction–diffusion master equation and particle tracking models
Journal of Physics A: Mathematical and Theoretical | 2008-03-04 | Paper |
Incorporating Diffusion in Complex Geometries into Stochastic Chemical Kinetics Simulations
SIAM Journal on Scientific Computing | 2006-05-30 | Paper |
