Cited in
(29)- Improving RNA secondary structure prediction via state inference with deep recurrent neural networks
- On the problem of reconstructing a mixture of \textsc{rna} structures
- On the structure of RNA branching polytopes
- Topological language for RNA
- Loop homology of bi-secondary structures
- Stochastic sampling of structural contexts improves the scalability and accuracy of RNA 3D module identification
- RNA folding kinetics using Monte Carlo and Gillespie algorithms
- RNAfold
- RNAsubopt
- ViennaRNA
- FFTbor2D
- UNAFold
- CONTRAfold
- RNAexinv
- ERD
- FFTbor
- KFOLD
- MODENA
- MSMBuilder
- Pfold
- RNAexpNumNbors
- TPstructure
- uShuffle
- patteRNA
- reactIDR
- rna-state-inf
- Asymptotic distribution of motifs in a stochastic context-free grammar model of RNA folding
- Combinatorial RNA design: designability and structure-approximating algorithm in Watson-Crick and Nussinov-Jacobson energy models
- Rolling-circle and strand-displacement mechanisms for non-enzymatic RNA replication at the time of the origin of life
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