Cited in
(47)- Estimating sequence similarity from read sets for clustering next-generation sequencing data
- \textit{De novo} clustering of long-read transcriptome data using a greedy, quality-value based algorithm
- An impossibility result for phylogeny reconstruction from \(k\)-mer counts
- Improving MinHash via the containment index with applications to metagenomic analysis
- GAGE
- SSAKE
- Cogent
- Rainbow
- KMC
- CLARK
- Corset
- d2_cluster
- DNACLUST
- EasyCluster2
- isONclust
- Grouper
- LSC
- MeShClust
- parasail
- SlideSort
- Starcode
- sourmash
- TreeCluster
- TIPP
- BioBloom Tools
- BLESS
- Compareads
- GemSIM
- STAR
- BAPS 2
- Kraken
- Squeakr
- Accurate Reconstruction of Microbial Strains from Metagenomic Sequencing Using Representative Reference Genomes
- Quantifying hierarchical conflicts in homology statements
- MetaPhlAn
- panX
- Sigma
- CONSULT-II
- MetaPhyler
- PathOGiST: A Novel Method for Clustering Pathogen Isolates by Combining Multiple Genotyping Signals
- SPARSE
- Taxator-tk
- metaSPAdes
- OGRE
- oblr
- ART
- MALT
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