Spatio-temporal model for multiple ChIP-seq experiments

DOI10.1515/SAGMB-2014-0074MaRDI QIDQ2344259zbMATH OpenOpenAlexWikidataFDO

Authors Saverio Ranciati, Cinzia Viroli, Ernst C. Wit

Publication date 13 May 2015

Published in Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1515/sagmb-2014-0074

zbMATH Keywords

MCMCMarkov random field modelmixture distributionsChIP-seq

Mathematics Subject Classification ID

Random fields; image analysis (62M40) General biostatistics (92B15)

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Cites work

• scientific article; zbMATH DE number 720689 (Why is no real title available?)
• scientific article; zbMATH DE number 1134987 (Why is no real title available?)
• A statistical framework for the analysis of ChIP-seq data
• Markov random fields and their applications
• Negative Binomial Regression

Cited in

(4)

• A new approach for the joint analysis of multiple ChIP-Seq libraries with application to histone modification
• PICS: Probabilistic Inference for ChIP-seq
• Modeling and Analysis of Multi‐Library, Multi‐Group SAGE Data with Application to a Study of Mouse Cerebellum
• Mixture model with multiple allocations for clustering spatially correlated observations in the analysis of ChIP-Seq data

Describes a project that uses

Uses Software

• HPeak
• COUNT
• BayesPeak

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