Statistics of canonical RNA pseudoknot structures

DOI10.1016/J.JTBI.2008.04.002MaRDI QIDQ1795258zbMATH OpenOpenAlexWikidataFDO

Authors Fenix W. D. Huang, Christian M. Reidys

Publication date 16 October 2018

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2008.04.002

zbMATH Keywords

central limit theoremsingularity analysis\(D\)-finite\(k\)-noncrossing RNA structure

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Recommendations

• Stacks in canonical RNA pseudoknot structures
• RNA pseudoknot structures with arc-length \(\geq 3\) and stack-length \(\geq \sigma \)
• Combinatorial design of pseudoknot RNA
• Central and local limit theorems for RNA structures
• Combinatorics of RNA structures with pseudoknots

Cites work

• scientific article; zbMATH DE number 3675903 (Why is no real title available?)
• Analytic combinatorics
• Asymptotic enumeration of RNA structures with pseudoknots
• Central and local limit theorems for RNA structures
• Combinatorial design of pseudoknot RNA
• Combinatorics of RNA Hairpins and Cloverleaves
• Combinatorics of RNA secondary structures
• Combinatorics of RNA structures with pseudoknots
• Crossings and nestings in tangled diagrams
• Crossings and nestings of matchings and partitions
• Differentiably finite power series
• Linear trees and RNA secondary structure
• Random Walk in a Weyl Chamber
• Random walks in Weyl chambers and the decomposition of tensor powers
• Singularity analysis, Hadamard products, and tree recurrences

Cited in

(9)

• On the decomposition of \(k\)-noncrossing RNA structures
• Local connectivity of neutral networks
• Stacks in canonical RNA pseudoknot structures
• RNA pseudoknot structures with arc-length \(\geq 3\) and stack-length \(\geq \sigma \)
• Central and local limit theorems for RNA structures
• The block spectrum of RNA pseudoknot structures
• Combinatorics of RNA structures with pseudoknots
• Irreducibility in RNA structures
• RNA structures with pseudo-knots: graph-theoretical, combinatorial, and statistical properties

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