Subsequence-based feature map for protein function classification

DOI10.1016/J.COMPBIOLCHEM.2007.11.004MaRDI QIDQ936077zbMATH OpenOpenAlexWikidataFDO

Authors Omer Sinan Sarac, Özge Gürsoy-Yüzügüllü, Rengul Cetin-Atalay, Volkan Atalay

Publication date 12 August 2008

Published in Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL http://hdl.handle.net/11693/23154

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Biochemistry, molecular biology (92C40)

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Cites work

• ECS: an automatic enzyme classifier based on functional domain composition
• Percolation of annotation errors through hierarchically structured protein sequence databases

Cited in

(3)

• Feature extraction by statistical contact potentials and wavelet transform for predicting subcellular localizations in gram negative bacterial proteins
• Classifying protein sequences using hydropathy blocks
• High performance set of PseAAC and sequence based descriptors for protein classification

Describes a project that uses

Uses Software

• SVMlight
• GOtcha
• PSI-BLAST
• BLAST
• PRED-CLASS
• LFM-Pro
• MotifCut
• SVM-Prot

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