Classifying protein sequences using hydropathy blocks

DOI10.1016/J.PATCOG.2005.11.012MaRDI QIDQ850126zbMATH OpenOpenAlexFDO

Authors De-Shuang Huang, Xing-Ming Zhao, Guang-Bin Huang, Yiu-ming Cheung

Publication date 15 November 2006

Published in Pattern Recognition (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.patcog.2005.11.012

zbMATH Keywords

support vector machinehydropathy blocksprotein sequence classification

Mathematics Subject Classification ID

Learning and adaptive systems in artificial intelligence (68T05) Pattern recognition, speech recognition (68T10)

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Cited in

(8)

• Calibrating the classifier for protein family prediction with protein sequence using machine learning techniques: An empirical investigation
• Towards a comprehensive collection of diagnostic patterns for protein sequence classification
• Analysis of proteomics data: block \(k\)-mean alignment
• The method for identification of hierarchical organization of protein sequences
• Classify vertebrate hemoglobin proteins by incorporating the evolutionary information into the general PseAAC with the hybrid approach
• Efficient bottom-up hybrid hierarchical clustering techniques for protein sequence classification
• A comparative computational analysis of protein sequences and literature mining classify `orphan' neurotransmitter transporters
• Subsequence-based feature map for protein function classification

Describes a project that uses

Uses Software

• GPCRpred
• BLAST
• PSI-BLAST

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