Subsequence-based feature map for protein function classification

DOI10.1016/J.COMPBIOLCHEM.2007.11.004zbMATH Open1141.92018OpenAlexW2083582778WikidataQ47942156 ScholiaQ47942156MaRDI QIDQ936077FDOQ936077

Authors: Omer Sinan Sarac, Özge Gürsoy-Yüzügüllü, Rengul Cetin-Atalay, Volkan Atalay 

Publication date: 12 August 2008

Published in: Computational Biology and Chemistry (Search for Journal in Brave)

Full work available at URL: http://hdl.handle.net/11693/23154

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Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Biochemistry, molecular biology (92C40)

Cites Work

• Percolation of annotation errors through hierarchically structured protein sequence databases
• ECS: an automatic enzyme classifier based on functional domain composition

Cited In (3)

• Classifying protein sequences using hydropathy blocks
• High performance set of PseAAC and sequence based descriptors for protein classification
• Feature extraction by statistical contact potentials and wavelet transform for predicting subcellular localizations in gram negative bacterial proteins

Uses Software

• SVMlight
• GOtcha
• PSI-BLAST
• BLAST
• PRED-CLASS
• LFM-Pro
• MotifCut
• SVM-Prot

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