Tangle analysis of Gin site-specific recombination

DOI10.1017/S0305004103007266MaRDI QIDQ4819123zbMATH OpenOpenAlexFDO

Authors M. Vazquez, De Witt L. Sumners

Publication date 24 September 2004

Published in Mathematical Proceedings of the Cambridge Philosophical Society (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1017/s0305004103007266

Mathematics Subject Classification ID

Continued fractions (11A55) Biophysics (92C05) Biochemistry, molecular biology (92C40)

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• Tangle analysis of difference topology experiments: applications to a Mu protein-DNA complex
• The classification of rational subtangle replacements between rational tangles
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• Affine reflection groups for tiling applications: knot theory and DNA
• scientific article; zbMATH DE number 5885324 (Why is no real title available?)
• Recent advances on the non-coherent band surgery model for site-specific recombination
• Dynamics of a trefoil knotted vortex
• CLASSIFICATION OF TANGLE SOLUTIONS FOR INTEGRASES, A PROTEIN FAMILY THAT CHANGES DNA TOPOLOGY
• THE WRITHE OF ORIENTED POLYGONAL GRAPHS
• Rational tangle surgery and Xer recombination on catenanes
• An algebraic view of bacterial genome evolution
• Systems of 3-braid equations
• Braid solutions to the action of the Gin enzyme
• Site-specific recombination modeled as a band surgery: applications to Xer recombination
• Stability of the Cauchy additive functional equation on tangle space and applications
• Separation scaling for viscous vortex reconnection
• DNA topology review
• Random state transitions of knots: a first step towards modeling unknotting by type II topoisomerases
• Modeling protein-DNA complexes with tangles
• An algorithm based on 3-braids to solve tangle equations arising in the action of Gin DNA invertase

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