Topological sequence analysis of genomes: Delta complex approaches

DOI10.3934/FODS.2026003MaRDI QIDQ7294456zbMATH OpenFDO

Authors Jian Liu, Li Shen, Dong Chen, G. W. Wei

Publication date 13 July 2026

Published in Foundations of Data Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.3934/FODS.2026003

Mathematics Subject Classification ID

Persistent homology and applications, topological data analysis (55N31) Topological data analysis (62R40) Biologically inspired models of computation (DNA computing, membrane computing, etc.) (68Q07)

Cites work

• A new method to cluster DNA sequences using Fourier power spectrum
• Biological Sequence Analysis
• Cohomology of digraphs and (undirected) graphs
• Combinatorial topological models for phylogenetic networks and the mergegram invariant
• Comparison of phylogenetic trees
• Evolutionary de Rham-Hodge method
• Persistent Dirac of paths on digraphs and hypergraphs
• Persistent homology -- a survey
• Persistent Laplacians: properties, algorithms and implications
• Persistent path homology of directed networks
• Persistent path Laplacian
• Quantum persistent homology
• The algebraic stability for persistent Laplacians
• Topology and data
• Topology of viral evolution

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