Statistical methods for DNA sequence segmentation
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Publication:5926347
DOI10.1214/ss/1028905933zbMath0960.62121OpenAlexW2005711658MaRDI QIDQ5926347
Braun, Jerome V., Hans-Georg Müller
Publication date: 1998
Published in: Statistical Science (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1214/ss/1028905933
amino acidsbacteriophage lambdachange-point problemchromosome bandingdeoxyri-bonucleic acid sequenceshidden Markov chainlonge range correlation modelsnucleotidepatchinessproteinsquasideviancesplit local polynomialstatistical genetics
Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40)
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Cites Work
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- Reversible jump Markov chain Monte Carlo computation and Bayesian model determination
- Statistical composition of high-scoring segments from molecular sequences
- Estimating the number of change-points via Schwarz' criterion
- Asymptotic inference for a change-point Poisson process
- Algorithms for the optimal identification of segment neighborhoods
- Stochastic models for heterogeneous DNA sequences
- Time series: theory and methods.
- Product partition models for change point problems
- Change-points in nonparametric regression analysis
- Change point estimation using nonparametric regression
- Two-stage change-point estimators in smooth regression models
- Discontinuous versus smooth regression
- Nonparametric statistical procedures for the changepoint problem
- Taboo Search: An Approach to the Multiple Minima Problem
- Bayesian Models for Multiple Local Sequence Alignment and Gibbs Sampling Strategies
- Maximum likelihood estimation of multiple change points
- Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes.
- Limit distributions of maximal segmental score among Markov-dependent partial sums
- Hidden Markov chains and the analysis of genome structure
- A Bayesian approach to inference about a change-point in a sequence of random variables
- Spectral analysis for categorical time series: Scaling and the spectral envelope
- The Collapsed Gibbs Sampler in Bayesian Computations with Applications to a Gene Regulation Problem
- Power of the scan statistic in detecting a changed segment in a Bernoulli sequence
- A Cluster Analysis Method for Grouping Means in the Analysis of Variance
- Local Polynomial Kernel Regression for Generalized Linear Models and Quasi-Likelihood Functions
- Hierarchical Bayesian Analysis of Changepoint Problems
- Bayesian Retrospective Multiple-Changepoint Identification
- The Use of Logistic Models for the Analysis of Codon Frequencies of DNA Sequences in Terms of Explanatory Variables
- Is the Geometry of Nature Fractal?
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