Perturbed soliton excitations in the DNA double helix

DOI10.1016/J.PHYSD.2007.04.005zbMath1117.35325arXivnlin/0602037OpenAlexW2110310221MaRDI QIDQ997361

J. Martínez

Publication date: 23 July 2007

Published in: Physica D (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/nlin/0602037

zbMATH Keywords

perturbed sine-Gordon equationDNA dynamicskink-antikink solitonmultiple-scale soliton perturbation

Mathematics Subject Classification ID

KdV equations (Korteweg-de Vries equations) (35Q53) Genetics and epigenetics (92D10) Perturbations, KAM theory for infinite-dimensional Hamiltonian and Lagrangian systems (37K55)

Related Items (18)

Exact solutions for a nonlinear model ⋮ Optical solitons of a cubic-quartic nonlinear Schrödinger equation with parabolic law nonlinearity in optical metamaterials ⋮ Nonlinear dynamics of DNA systems with inhomogeneity effects ⋮ Nonlinear dynamics of DNA -- Riccati generalized solitary wave solutions ⋮ Perturbed soliton solutions for an integral modified KdV equation ⋮ Perturbed soliton-like molecular excitations in a deformed DNA chain ⋮ Stationary solitary and kink solutions in the helicoidal Peyrard-Bishop model of DNA molecule ⋮ NONLINEAR DYNAMICS OF LONG-RANGE PROTEIN-HELICOIDAL DNA INTERACTIONS ⋮ Dynamics of DNA breathing in the Peyrard-Bishop model with damping and external force ⋮ Compacton anti-compacton pair for hydrogen bonds and rotational waves in DNA dynamics ⋮ Nonlinear molecular excitations in a completely inhomogeneous DNA chain ⋮ Long-range interactions between adjacent and distant bases in a DNA and their impact on the ribonucleic acid polymerase-DNA dynamics ⋮ Soliton-based logic gates using spin ladder ⋮ Discrete instability in the DNA double helix ⋮ DNA-RNA transcription as an impact of viscosity ⋮ KINK SOLITONS IN DNA ⋮ Mode conversions and molecular forms of breathers under parameter control ⋮ Solitary waves in an inhomogeneous chain of α-helical proteins

Cites Work

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• On a Toda lattice model with a transversal degree of freedom
• The stochastic, damped KdV equation
• A Green’s function for a linear equation associated with solitons
• The Inverse Scattering Transform‐Fourier Analysis for Nonlinear Problems
• Moving discrete breathers in a Klein Gordon chain with an impurity
• A direct approach to studying soliton perturbations
• Long-range interactions of solitons in a double chain

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