Classification of molecular sequence data using Bayesian phylogenetic mixture models

DOI10.1016/J.CSDA.2014.01.008zbMath1506.62117arXiv1107.5338OpenAlexW2146180665MaRDI QIDQ1623476

Y. Aharonov

Publication date: 23 November 2018

Published in: Computational Statistics and Data Analysis (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1107.5338

zbMATH Keywords

classificationmodel selectionMarkov chain Monte CarlophylogenyBayesian mixture modelamong-site rate variation

Mathematics Subject Classification ID

Computational methods for problems pertaining to statistics (62-08) Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Bayesian inference (62F15) Monte Carlo methods (65C05) Numerical analysis or methods applied to Markov chains (65C40)

Uses Software

• fastDNAml
• MrBayes
• Seq-Gen
• PAML

Cites Work

• Reversible jump Markov chain Monte Carlo computation and Bayesian model determination
• Two-way Bayesian hierarchical phylogenetic models: an application to the co-evolution of gp120 and gp41 during and after enfuvirtide treatment
• Estimating Bayes factors via thermodynamic integration and population MCMC
• A comparative study of Monte Carlo methods for efficient evaluation of marginal likelihood
• Markov chain Monte Carlo methods and the label switching problem in Bayesian mixture modeling
• A Bayesian Hierarchical Model for Photometric Red Shifts
• Marginal Likelihood Estimation via Power Posteriors
• Computing Bayes Factors Using a Generalization of the Savage-Dickey Density Ratio
• Bayes Factors
• Comparison of labeled trees with valency three
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