Neural ideals and stimulus space visualization

DOI10.1016/J.AAM.2017.10.002zbMath1382.92021arXiv1607.00697OpenAlexW2963292637MaRDI QIDQ1693345

Nora Youngs, Nida Obatake, Elizabeth Gross

Publication date: 31 January 2018

Published in: Advances in Applied Mathematics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1607.00697

zbMATH Keywords

information visualizationtoric idealneural codeEuler diagram

Mathematics Subject Classification ID

Computational aspects related to convexity (52B55) Neural networks for/in biological studies, artificial life and related topics (92B20) Convex sets in (2) dimensions (including convex curves) (52A10) Applications of commutative algebra (e.g., to statistics, control theory, optimization, etc.) (13P25)

Related Items (8)

Neural codes with three maximal codewords: convexity and minimal embedding dimension ⋮ Minimal embedding dimensions of connected neural codes ⋮ Gröbner bases of neural ideals ⋮ Universal Gröbner bases of toric ideals of combinatorial neural codes ⋮ Neural Codes, Decidability, and a New Local Obstruction to Convexity ⋮ Morphisms of Neural Codes ⋮ Neural codes and the factor complex ⋮ State polytopes related to two classes of combinatorial neural codes

Uses Software

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• 4ti2
• Gfan

Cites Work

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• The neural ring: an algebraic tool for analyzing the intrinsic structure of neural codes
• Obstructions to convexity in neural codes
• Toric dynamical systems
• Lectures on algebraic statistics
• Algebraic algorithms for sampling from conditional distributions
• Toric algebra of hypergraphs
• COMBINATORIAL DEGREE BOUND FOR TORIC IDEALS OF HYPERGRAPHS
• Algebraic statistics for a directed random graph model with reciprocation
• Toric Ideals of Phylogenetic Invariants
• Some Geometrical Aspects of Control Points for Toric Patches
• Combinatorial Neural Codes from a Mathematical Coding Theory Perspective
• Algebraic Statistics for Computational Biology
• What Makes a Neural Code Convex?

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