Species specific amino acid sequence-protein local structure relationships: an analysis in the light of a structural alphabet

DOI10.1016/j.jtbi.2011.01.047zbMath1405.92224OpenAlexW1985807583WikidataQ30399869 ScholiaQ30399869MaRDI QIDQ2413837

Alexandre G. de Brevern, Joseph Agnel Praveen

Publication date: 17 September 2018

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2011.01.047

zbMATH Keywords

amino acidsmalariasecondary structurestructural alphabetprotein blocks

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Uses Software

• svmPRAT
• PyMOL
• PONDR-FIT
• PSI-BLAST
• BLAST
• GOLD
• MPRAP

Cites Work

• Analyzing the sequence-structure relationship of a library of local structural prototypes
• Adaptation of proteins to different environments: a comparison of proteome structural properties in \textit{Bacillus subtilis} and \textit{Escherichia coli}
• Self-organizing maps.

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