Parameter uncertainty in biochemical models described by ordinary differential equations

DOI10.1016/J.MBS.2013.03.006zbMath1283.92046OpenAlexW2020228681WikidataQ38093715 ScholiaQ38093715MaRDI QIDQ2437736

N. A. W. van Riel, Peter A. J. Hilbers, J. Vanlier, C. A. Tiemann

Publication date: 13 March 2014

Published in: Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.mbs.2013.03.006

zbMATH Keywords

parameter estimationdynamical systemsuncertainty analysisinferenceBayesian

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Qualitative investigation and simulation of ordinary differential equation models (34C60) Systems biology, networks (92C42)

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Uses Software

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• BioBayes
• ABC-SysBio
• PottersWheel

Cites Work

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• SUNDIALS
• Parallel hierarchical sampling: a general-purpose interacting Markov chains Monte Carlo algorithm
• Estimating Bayes factors via thermodynamic integration and population MCMC
• Asymptotic normality of the maximum likelihood estimate in the independent not identically distributed case
• Introduction to functional differential equations
• Bootstrap confidence intervals. With comments and a rejoinder by the authors
• Recent developments in parameter estimation and structure identification of biochemical and genomic systems
• High-dimensional Bayesian parameter estimation: case study for a model of JAK2/STAT5 signaling
• Joining forces of Bayesian and frequentist methodology: a study for inference in the presence of non-identifiability
• Markov Chain Monte Carlo Convergence Diagnostics: A Comparative Review
• Tests for Cycling in a Signalling Pathway
• Bootstrap Confidence Intervals and Bootstrap Approximations
• A Spline Least Squares Method for Numerical Parameter Estimation in Differential Equations
• Nonparametric standard errors and confidence intervals
• Physiological Pharmacokinetic Analysis Using Population Modeling and Informative Prior Distributions
• Riemann Manifold Langevin and Hamiltonian Monte Carlo Methods
• Parameter Estimation for Differential Equations: a Generalized Smoothing Approach
• An invariant form for the prior probability in estimation problems

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