Generation of RNA pseudoknot structures with topological genus filtration

DOI10.1016/j.mbs.2013.07.014zbMath1308.92078arXiv1304.7397OpenAlexW2076175048WikidataQ45769514 ScholiaQ45769514MaRDI QIDQ2437014

Fenix W. D. Huang, Christian M. Reidys, Markus E. Nebel

Publication date: 27 February 2014

Published in: Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1304.7397

zbMATH Keywords

samplingpartition functionRNA pseudoknot structuretopological surfaceRNA secondary structuretopological genus

Mathematics Subject Classification ID

Related Items (5)

Statistics of topological RNA structures ⋮ Topological language for RNA ⋮ Shapes of topological RNA structures ⋮ Moduli spaces and macromolecules ⋮ On RNA-RNA interaction structures of fixed topological genus

Cites Work

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• Topological classification and enumeration of RNA structures by genus
• A new combinatorial identity for unicellular maps, via a direct bijective approach
• Spaces of RNA secondary structures
• A calculus for the random generation of labelled combinatorial structures
• The chromatic polynomial of fatgraphs and its categorification
• Random k -noncrossing RNA structures
• Crossings and nestings of matchings and partitions
• Fatgraph models of proteins
• Combinatorics of RNA Hairpins and Cloverleaves
• Algorithms for Loop Matchings
• Boltzmann Samplers for the Random Generation of Combinatorial Structures
• Proportions of Irreducible Diagrams
• RNA folding and large \(N\) matrix theory

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