A general framework for multiple testing dependence

DOI10.1073/PNAS.0808709105zbMath1359.62202OpenAlexW2024103316WikidataQ36981995 ScholiaQ36981995MaRDI QIDQ2962172

John D. Storey, Jeffrey T. Leek

Publication date: 16 February 2017

Published in: Proceedings of the National Academy of Sciences (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1073/pnas.0808709105

Mathematics Subject Classification ID

Epidemiology (92D30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Hypothesis testing in multivariate analysis (62H15) Genetics and epigenetics (92D10) Paired and multiple comparisons; multiple testing (62J15)

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Cites Work

• Unnamed Item
• Multiple hypothesis testing in microarray experiments.
• Resampling-based false discovery rate controlling multiple test procedures for correlated test statistics.
• The control of the false discovery rate in multiple testing under dependency.
• False discovery rate analysis of brain diffusion direction maps
• Significance analysis of microarrays applied to the ionizing radiation response
• Strong Control, Conservative Point Estimation and Simultaneous Conservative Consistency of False Discovery Rates: A Unified Approach
• A Direct Approach to False Discovery Rates
• Genomic Control for Association Studies
• Variance of the Number of False Discoveries
• Statistical significance for genomewide studies
• Large-Scale Simultaneous Hypothesis Testing
• Detecting differential gene expression with a semiparametric hierarchical mixture method

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