A Petri-net-based framework for biomodel engineering

DOI10.1007/978-3-319-08437-4_6MaRDI QIDQ5256766zbMATH OpenOpenAlexDBLPWikidataFDO

Authors Mary Ann Blätke, Christian Rohr, Monika Heiner, Wolfgang Marwan

Publication date 19 June 2015

Published in Large-Scale Networks in Engineering and Life Sciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-319-08437-4_6

zbMATH Keywords

Petri netsreverse engineeringautomatic network reconstructionmodular modellingmolecular regulatory networksbiomodel engineeringdynamic systems modelling

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45)

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(16)

• Bio-PEPA: A framework for the modelling and analysis of biological systems
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• Petri nets as a framework for the reconstruction and analysis of signal transduction pathways and regulatory networks
• A foundational framework for step-by-step model construction
• From Petri Nets to Differential Equations – An Integrative Approach for Biochemical Network Analysis
• Colouring space -- a coloured framework for spatial modelling in systems biology
• Executable Petri net models for the analysis of metabolic pathways
• Petri nets formalism facilitates analysis of complex biomolecular structural data
• How Petri nets might enhance your systems biology toolkit
• Modeling in systems biology. The Petri net approach. With a foreword of Jens Georg Reich.
• Petri nets semantics of reaction rules (RR). A language for ecosystems modelling
• Integrating Petri nets and flux balance methods in computational biology models: a methodological and computational practice
• Charlie -- an extensible Petri net analysis tool
• Preface
• Tissue Systems and Petri Net Synthesis
• Petri net models for the semi-automatic construction of large scale biological networks

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• MARCIE

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