A novel representation of DNA sequence based on CMI coding

DOI10.1016/J.PHYSA.2014.04.030MaRDI QIDQ1782942zbMATH OpenOpenAlexFDO

Authors Wenbing Hou, Qiuhui Pan, Mingfeng He

Publication date 20 September 2018

Published in Physica A (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.physa.2014.04.030

zbMATH Keywords

CMI codingDNA sequencegraphical representationphylogenetic treesimilarity analysis

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

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Cites work

• A 3D graphical representation of protein sequences based on the Gray code
• A new adjacent pair 2D graphical representation of DNA sequences
• A new graphical coding of DNA sequence and its similarity calculation
• A representation of DNA primary sequences by random walk
• Alignment-free comparison of genome sequences by a new numerical characterization
• Analysis of similarity/dissimilarity of DNA sequences based on chaos game representation
• C-curve: a novel 3D graphical representation of DNA sequence based on codons
• Graphical and numerical representations of DNA sequences: Statistical aspects of similarity
• Linear regression model of short k-word: a similarity distance suitable for biological sequences with various lengths
• New 3D graphical representation of DNA sequence based on dual nucleotides
• PNN-curve: a new 2D graphical representation of DNA sequences and its application
• Prediction of protein coding regions by the 3-base periodicity analysis of a DNA sequence
• Study of LZ-word distribution and its application for sequence comparison

Cited in

(9)

• DUC-curve, a highly compact 2D graphical representation of DNA sequences and its application in sequence alignment
• A novel DNA sequence similarity calculation based on simplified pulse-coupled neural network and Huffman coding
• Phylogenetic analysis of DNA sequences based on fractional Fourier transform
• A numerical representation of DNA sequences and its applications
• An improved binary representation of DNA sequences and its applications
• 4D graphical representation research of DNA sequences
• Circular helix-like curve: an effective tool of biological sequence analysis and comparison
• Graphs for representing statistics indexed by nucleotide or amino acid sequences
• scientific article; zbMATH DE number 5251518 (Why is no real title available?)

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