Analytical Time-Dependent Distributions for Gene Expression Models With Complex Promoter Switching Mechanisms
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Cites work
- A multiple time interval finite state projection algorithm for the solution to the chemical master equation
- Analytical results for a multistate gene model
- Approximation and inference methods for stochastic biochemical kinetics -- a tutorial review
- Distribution modes and their corresponding parameter regions in stochastic gene transcription
- Exact and approximate distributions of protein and mRNA levels in the low-copy regime of gene expression
- Functions of a matrix and Krylov matrices
- Kinetic Foundation of the Zero-Inflated Negative Binomial Model for Single-Cell RNA Sequencing Data
- Markovian modelling of gene product synthesis
- Multimodality and flexibility of stochastic gene expression
- Multiple-scale stochastic processes: decimation, averaging and beyond
- Multiscale stochastic modelling of gene expression
- On algebraic identities between generalized hypergeometric functions
- Reduction of Markov chains with two-time-scale state transitions
- Stochastic gene expression with a multistate promoter: breaking down exact distributions
Cited in
(23)- Dynamics of gene expression based on epigenetic modifications
- Energy cost and mean dwell times for the activity of promoter with complex structure
- Influence of complex promoter structure on gene expression
- Analysis of non-Markovian effects in generalized birth-death models
- Stationary distributions and metastable behaviour for self-regulating proteins with general lifetime distributions
- Kinetic characteristics of transcriptional bursting in a complex gene model with cyclic promoter structure
- Modulation of nuclear and cytoplasmic mRNA fluctuations by time-dependent stimuli: analytical distributions
- The mean and noise of FPT modulated by promoter architecture in gene networks
- Analytical results for a multistate gene model
- Reconstructing statistics of promoter switching from reporter protein population snapshot data
- Large deviations for the empirical measure and empirical flow of Markov renewal processes with a countable state space
- Modeling and analytical solution of free energy of complex promoter structure
- Analytical results for a non-Markovian process of gene expression with positive and negative feedbacks
- Optimal switching paths of a non-Markovian model of gene bursty expression
- Effects of bursty synthesis in organelle biogenesis
- Exact power spectrum in a minimal hybrid model of stochastic gene expression oscillations
- Spectral theory of stochastic gene expression: a Hilbert space framework
- Promoter architecture as a design principle for buffering transcriptional noise and diversifying expression patterns
- A novel computational method for two-state transcription model with non-exponential ON and OFF durations
- Modeling periodic transcriptions in tandem gene systems
- Moment approximation for a stochastic Schnakenberg reaction network with delay
- Parameter estimation and analysis of periodically driven stochastic gene transcription
- Estimation and inversion of the effects of cell population asynchrony in gene expression time-series
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