Asymptotic conditional singular value decomposition for high-dimensional genomic data

DOI10.1111/J.1541-0420.2010.01455.XMaRDI QIDQ3013964zbMATH OpenOpenAlexWikidataFDO

Authors Jeffrey T. Leek

Publication date 19 July 2011

Published in Biometrics (Search for Journal in Brave)

Full work available at URL http://europepmc.org/articles/pmc3165001

zbMATH Keywords

false discovery rategene expressiongenomicssingular value decompositionsurrogate variables

Mathematics Subject Classification ID

Factor analysis and principal components; correspondence analysis (62H25) Estimation in survival analysis and censored data (62N02) Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40)

Recommendations

• High-dimensional sparse factor modeling: applications in gene expression genomics
• On consistency and sparsity for principal components analysis in high dimensions
• Identifying the number of factors from singular values of a large sample auto-covariance matrix
• Exploratory factor analysis -- parameter estimation and scores prediction with high-dimensional data
• Principal component analysis in very high-dimensional spaces

Cites work

• A Direct Approach to False Discovery Rates
• A general framework for multiple testing dependence
• Adjusting batch effects in microarray expression data using empirical Bayes methods
• Asymptotic distributions of principal components based on robust dispersions
• Asymptotic Theory for Principal Component Analysis
• Consistency of restricted maximum likelihood estimators of principal components
• Determining the Number of Factors in Approximate Factor Models
• Determining the Number of Factors in the General Dynamic Factor Model
• False discovery rate analysis of brain diffusion direction maps
• High dimensional covariance matrix estimation using a factor model
• Matrix Analysis
• Strong Control, Conservative Point Estimation and Simultaneous Conservative Consistency of False Discovery Rates: A Unified Approach
• The asymptotic normal distribution of estimators in factor analysis under general conditions
• The elements of statistical learning. Data mining, inference, and prediction

Cited in

(6)

• Asymptotic performance of PCA for high-dimensional heteroscedastic data
• A note on estimation of dynamics of multiple gene expression based on singular value decomposition
• Some theorems on conditional mean convergence and conditional almost sure convergence for randomly weighted sums of dependent random variables
• Sparse latent factor regression models for genome-wide and epigenome-wide association studies
• Factor analysis of correlation matrices when the number of random variables exceeds the sample size
• Optimally Weighted PCA for High-Dimensional Heteroscedastic Data

Describes a project that uses

Uses Software

• ElemStatLearn

This page was built for publication: Asymptotic conditional singular value decomposition for high-dimensional genomic data

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q3013964)