Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data

DOI10.1007/978-3-319-89929-9_2MaRDI QIDQ5881334zbMATH OpenOpenAlexFDO

Authors Stefan Canzar, Tobias Marschall, Marcel H. Schulz

Publication date 9 March 2023

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-319-89929-9_2

zbMATH Keywords

HMMsepigeneticsmax clique enumerationNOMe-seq

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Protein sequences, DNA sequences (92D20) Software, source code, etc. for problems pertaining to biology (92-04)

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Cited in

(4)

• Using informative multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling
• ChromaClique
• NucPosPred: predicting species-specific genomic nucleosome positioning via four different modes of general PseKNC
• ThIEF: finding genome-wide trajectories of epigenetics marks

Describes a project that uses

Uses Software

• ART
• Bismark

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