Distributions of cherries for two models of trees

DOI10.1016/S0025-5564(99)00060-7MaRDI QIDQ1569920zbMATH OpenOpenAlexWikidataFDO

Authors Andy McKenzie, Mike Steel

Publication date 9 July 2000

Published in Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/s0025-5564(99)00060-7

zbMATH Keywords

phylogenyPolya urn modelstreesuniform modelsYule model

Mathematics Subject Classification ID

Applications of graph theory (05C90) Applications of statistics to biology and medical sciences; meta analysis (62P10) Problems related to evolution (92D15)

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Cites work

• Asymptotic Normality in the Generalized Polya–Eggenberger Urn Model, with an Application to Computer Data Structures
• Branch and bound algorithms to determine minimal evolutionary trees
• Central limit theorems for urn models
• Distribution of the Symmetric Difference Metric on Phylogenetic Trees
• Embedding of Urn Schemes into Continuous Time Markov Branching Processes and Related Limit Theorems
• scientific article; zbMATH DE number 19286 (Why is no real title available?)
• scientific article; zbMATH DE number 3410334 (Why is no real title available?)
• The continuum random tree. III
• The probabilities of rooted tree-shapes generated by random bifurcation

Cited in

(45)

• The expected value of the squared cophenetic metric under the Yule and the uniform models
• Exact and approximate limit behaviour of the Yule tree's cophenetic index
• Mathematical properties of the gene duplication cost
• Probability distributions of ancestries and genealogical distances on stochastically generated rooted binary trees
• On cherry and pitchfork distributions of random rooted and unrooted phylogenetic trees
• Measuring tree balance using symmetry nodes -- a new balance index and its extremal properties
• The distributions under two species-tree models of the number of root ancestral configurations for matching gene trees and species trees
• On the minimum value of the Colless index and the bifurcating trees that achieve it
• Can extinction rates be estimated without fossils?
• On asymptotic joint distributions of cherries and pitchforks for random phylogenetic trees
• Dynamic Pólya-Eggenberger urns
• Revisiting Shao and Sokal's B₂ index of phylogenetic balance
• Multiple merger gene genealogies in two species: monophyly, paraphyly, and polyphyly for two examples of lambda coalescents
• A balance index for phylogenetic trees based on rooted quartets
• Finding the best resolution for the Kingman-Tajima coalescent: theory and applications
• Limit theorems for patterns in phylogenetic trees
• Clades and clans: a comparison study of two evolutionary models
• Does random tree puzzle produce Yule-Harding trees in the many-taxon limit?
• Exact formulas for the variance of several balance indices under the Yule model
• Yule-generated trees constrained by node imbalance
• Gaussian approximations for phylogenetic branch length statistics under stochastic models of biodiversity
• On statistical tests of phylogenetic tree imbalance: The Sackin and other indices revisited
• Asymptotic joint normality of counts of uncorrelated motifs in recursive trees
• Squaring within the Colless index yields a better balance index
• On joint subtree distributions under two evolutionary models
• The class of tenable zero-balanced Pólya urn schemes: characterization and Gaussian phases
• The transmission process: a combinatorial stochastic process for the evolution of transmission trees over networks
• Large deviations for the leaves in some random trees
• scientific article; zbMATH DE number 7564377 (Why is no real title available?)
• On a matching distance between rooted phylogenetic trees
• Minimal clade size and external branch length under the neutral coalescent
• Computing the rooted triplet distance between phylogenetic networks
• Properties of phylogenetic trees generated by Yule-type speciation models
• Building a small and informative phylogenetic supertree
• The distributions under two species-tree models of the total number of ancestral configurations for matching gene trees and species trees
• Distributions of cherries and pitchforks for the Ford model
• Limit theorems for patterns in ranked tree‐child networks
• A Mathematical Connection Between Single-Elimination Sports Tournaments and Evolutionary Trees
• Distribution of external branch lengths in Yule histories
• Distributions of 4-subtree patterns for uniform random unrooted phylogenetic trees
• On the maximum value of the stairs2 index
• Statistical and structural bias in birth-death models
• Topology and inference for Yule trees with multiple states
• A faster algorithm for constructing the frequency difference consensus tree
• Stochastic properties of generalised Yule models, with biodiversity applications

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