Dynamical properties of models for the Calvin cycle

DOI10.1007/S10884-014-9385-YMaRDI QIDQ481262zbMATH OpenOpenAlexFDO

Authors Alan D. Rendall, Juan J. Velázquez

Publication date 12 December 2014

Published in Journal of Dynamics and Differential Equations (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/1303.3621

zbMATH Keywords

bistabilityblow-upphotosynthesisreaction network

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45)

Abstract: Modelling the Calvin cycle of photosynthesis leads to various systems of ordinary differential equations and reaction-diffusion equations. They differ by the choice of chemical substances included in the model, the choices of stoichiometric coefficients and chemical kinetics and whether or not diffusion is taken into account. This paper studies the long-time behaviour of solutions of several of these systems, concentrating on the ODE case. In some examples it is shown that there exist two positive stationary solutions. In several cases it is shown that there exist solutions where the concentrations of all substrates tend to zero at late times and others (runaway solutions) where the concentrations of all substrates increase without limit. In another case, where the concentration of ATP is explicitly included, runaway solutions are ruled out.

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Cites work

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Cited in

(10)

• A simple model of the Calvin cycle has only one physiologically feasible steady state under the same external conditions
• Coping with dynamical reaction system topologies using deterministic P modules: a case study of photosynthesis
• The minimal model of Hahn for the Calvin cycle
• Analysis of a model of the Calvin cycle with diffusion of ATP
• Stationary diffusion gradients associated with photosynthetic carbon flux -- a study of compartmental versus diffusion-reaction models
• Stability of stationary solutions in models of the Calvin cycle
• An efficient characterization of complex-balanced, detailed-balanced, and weakly reversible systems
• Characteristic disruptions of an excitable carbon cycle
• Overload breakdown in models for photosynthesis
• The detailed balance property and chemical systems out of equilibrium

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