Enumerative aspects of secondary structures

DOI10.1016/J.DISC.2004.04.001MaRDI QIDQ1877651zbMATH OpenOpenAlexFDO

Authors Tomislav Došlić, Dragutin Svrtan, Darko Veljan

Publication date 19 August 2004

Published in Discrete Mathematics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.disc.2004.04.001

zbMATH Keywords

Dyck pathNarayana numbersMotzkin pathOrthogonal polynomialsMotzkin numbersLog-convexitySecondary structures

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Exact enumeration problems, generating functions (05A15) Asymptotic enumeration (05A16) Enumeration in graph theory (05C30) Edge subsets with special properties (factorization, matching, partitioning, covering and packing, etc.) (05C70) Orthogonal polynomials and functions of hypergeometric type (Jacobi, Laguerre, Hermite, Askey scheme, etc.) (33C45) Combinatorial inequalities (05A20) Polyominoes (05B50)

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Cites work

• scientific article; zbMATH DE number 3928776 (Why is no real title available?)
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• scientific article; zbMATH DE number 1736459 (Why is no real title available?)
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• RNA structures with pseudo-knots: graph-theoretical, combinatorial, and statistical properties
• Some remarks on uniform asymptotic expansions for Bessel functions

Cited in

(23)

• Logarithmic behavior of some combinatorial sequences
• Chord diagrams, contact-topological quantum field theory and contact categories
• Seven (lattice) paths to log-convexity
• Inequalities associated with the Baxter numbers
• The log-convexity of the poly-Cauchy numbers
• scientific article; zbMATH DE number 3885910 (Why is no real title available?)
• Regular simple queues of protein contact maps
• Some statistics on generalized Motzkin paths with vertical steps
• Enumeration of symmetric arc diagrams
• Log-convexity and strong q--convexity for some triangular arrays
• New sufficient conditions for log-balancedness, with applications to combinatorial sequences
• The log-balancedness of generalized derangement numbers
• Secondary structures, plane trees and Motzkin numbers
• The log-convexity of \(r\)-derangement numbers
• Asymptotic enumeration of RNA secondary structure
• Peakless Motzkin paths with marked level steps at fixed height
• Narayana numbers and Schur-Szegő composition
• scientific article; zbMATH DE number 1736459 (Why is no real title available?)
• The log-behavior of the sequence for the partial sum of a log-convex sequence
• Enumeration of RNA hairpins and cloverleaves
• Knight's paths towards Catalan numbers
• On the log-convexity of combinatorial sequences
• RNA secondary structures with given motif specification: combinatorics and algorithms

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