Genome galaxy identified by the circular code theory

DOI10.1007/S11538-024-01366-1MaRDI QIDQ6655095zbMATH OpenFDO

Authors Christian J. Michel, Jean-Sébastien Sereni

Publication date 20 December 2024

Published in Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/S11538-024-01366-1

zbMATH Keywords

circular code theorycodon dispersionformulas for codon usagegenome galaxyprobabilistic model for ambiguous sequencesreading frame retrieval

Mathematics Subject Classification ID

Biology and other natural sciences (92-XX)

Recommendations

• Reading frame retrieval of genes: a new parameter of codon usage based on the circular code theory
• The mystery of two straight lines in bacterial genome statistics
• Identification of circular codes in bacterial genomes and their use in a factorization method for retrieving the reading frames of genes
• Circular codes revisited: a statistical approach
• Circular codes in archaeal genomes

Cites work

• \(n\)-nucleotide circular codes in graph theory
• A 2006 review of circular codes in genes
• A relation between trinucleotide comma-free codes and trinucleotide circular codes
• Circular codes, symmetries and transformations
• Identification of all trinucleotide circular codes
• Mixed circular codes
• Reading frame retrieval of genes: a new parameter of codon usage based on the circular code theory
• The relation between \(k\)-circularity and circularity of codes
• Varieties of comma-free codes

This page was built for publication: Genome galaxy identified by the circular code theory

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q6655095)