Geometric models for secondary structures in proteins

DOI10.7546/GIQ-16-2015-282-300MaRDI QIDQ2825609zbMATH OpenOpenAlexFDO

Authors Magdalena Daniela Toda, Bhagya Athukorallage

Publication date 13 October 2016

Full work available at URL https://semanticscholar.org/paper/f4b78382e16067aef98349bf023b6d8deb9b9f7f

zbMATH Keywords

beta barrelselastic membranegeneralized Willmore equationHelfrich energysurfaces of revolution

Mathematics Subject Classification ID

Surfaces in Euclidean and related spaces (53A05) Minimal surfaces in differential geometry, surfaces with prescribed mean curvature (53A10) Protein sequences, DNA sequences (92D20)

Review text

The authors create a model for beta barrels, secondary structures in proteins. The model is based on the generalized Willmore equation. They first discuss beta barrels to provide the background on the biological impetus to the project. They then introduce the generalized Willmore equation. Next, the authors apply the generalized Willmore equation to beta barrels and discuss the numerical stability of the application.NEWLINENEWLINEFor the entire collection see [Zbl 1317.00020].

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Cited in

(9)

• Application of the moving frame method to deformed Willmore surfaces in space forms
• The doubly connected minimal surfaces between two circles in parallel planes
• On the variation of curvature functionals in a space form with application to a generalized Willmore energy
• Geometric restrictions on producible polygonal protein chains
• Multiscale geometric modeling of macromolecules. I: Cartesian representation
• Towards symmetry-based explanation of (approximate) shapes of alpha-helices and beta-sheets (and beta-barrels) in protein structure
• scientific article; zbMATH DE number 2114998 (Why is no real title available?)
• Generalized Willmore energies and applications
• C. C. Chen's minimal surface: from parametric form to algebraic equation

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