scientific article; zbMATH DE number 223921

zbMATH Open0811.92012MaRDI QIDQ5286372FDOQ5286372

Authors Zu-Kang Feng, Da-Fu Ding

Publication date 29 June 1993

zbMATH Keywords

dynamic programmingstructure alignmentprotein conformationmultiple alignment of globinsserine proteinasescomparing protein structuresaspartic proteinasescurvature and torsion of protein backbone

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Classical differential geometry (53A99)

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(21)

• PROSIGN: a method for protein secondary structure assignment based on three-dimensional coordinates of consecutive \(C_\alpha \) atoms
• A new family of global protein shape descriptors
• Bayesian alignment of proteins via Delaunay tetrahedralization
• A differential geometric treatment of protein structure comparison
• A quadratic approximation for protein sequence to structure mapping.
• Theory and Applications of Models of Computation
• Solving a generalized distance geometry problem for protein structure determination
• Bayesian comparison of protein structures using partial Procrustes distance
• Molecular alignment as a penalized permutation Procrustes problem
• Geometric Suffix Tree: A New Index Structure for Protein 3-D Structures
• A Euclidean distance matrix model for protein molecular conformation
• Matching protein structures with fuzzy alignments
• The alignment of protein structures in three dimensions
• scientific article; zbMATH DE number 2130516 (Why is no real title available?)
• Geometric models for secondary structures in proteins
• On a geometry-based approach to protein sequence alignment
• Comparison of protein secondary structures based on backbone dihedral angles
• Multiple structure alignment based on geometrical correlation of secondary structure elements
• scientific article; zbMATH DE number 2030167 (Why is no real title available?)
• ARIADNE: pattern-directed inference and hierarchical abstraction in protein structure recognition
• Exploring the limits of fold discrimination by structural alignment: a large scale benchmark using decoys of known fold

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