Identification of protein latent periodicities using recurrent correlation analysis

DOI10.1016/J.JTBI.2008.08.024MaRDI QIDQ1798234zbMATH OpenOpenAlexWikidataFDO

Authors Xiaofeng Ji, Yuejun Wang, Mi Sun, Haiying Wang

Publication date 23 October 2018

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2008.08.024

zbMATH Keywords

mainly beta classPearson correlation coefficientsequencetertiary structure

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Recommendations

• Recognition of Protein Interaction Regions Through Time-Frequency Analysis
• Identifying periodic occurrences of a template with applications to protein structure

Cites work

• A common sequence-associated physicochemical feature for proteins of beta-trefoil family
• Hidden symmetries in the primary sequences of beta-barrel family

Cited in

(5)

• A simple method of identifying symmetric substructures of proteins
• Nonlinear analysis of sequence symmetry of beta-trefoil family proteins
• Latent periodicity of serine-threonine and tyrosine protein kinases and other protein families
• Recognition of Protein Interaction Regions Through Time-Frequency Analysis
• Search of latent periodicity in amino acid sequences by means of genetic algorithm and dynamic programming

Describes a project that uses

Uses Software

• DISTAN
• HHrep

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