New Methods for Detecting Lineage-Specific Selection

DOI10.1007/11732990_17MaRDI QIDQ3596277zbMATH OpenOpenAlexWikidataFDO

Authors Adam C. Siepel, Katherine Pollard, David Haussler

Publication date 30 August 2007

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/11732990_17

zbMATH Keywords

lineage-specific selectionphylogenetic \(P\)-valuesphylogenetic hidden Markov model

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Problems related to evolution (92D15)

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Cited in

(11)

• Lines of descent under selection
• Summary Statistics for Endpoint-Conditioned Continuous-Time Markov Chains
• Evolution of conserved non-coding sequences.
• Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes
• A non-parametric method for detecting specificity determining sites in protein sequence alignments
• A Chemical-Distance-Based Test for Positive Darwinian Selection
• POSITIVE DARWINIAN SELECTION: DOES THE COMPARATIVE METHOD RULE?
• Markov Bridges, Bisection and Variance Reduction
• Synonymous and nonsynonymous distances help untangle convergent evolution and recombination
• Counting labeled transitions in continuous-time Markov models of evolution
• Simulation from endpoint-conditioned, continuous-time Markov chains on a finite state space, with applications to molecular evolution

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