Numerical method for multi-alleles genetic drift problem

DOI10.1137/18M1211581MaRDI QIDQ5232306zbMATH OpenOpenAlexFDO

Authors Shixin Xu, Xinfu Chen, Chun Liu, Xingye Yue

Publication date 2 September 2019

Published in SIAM Journal on Numerical Analysis (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1137/18m1211581

zbMATH Keywords

complete solutionfixationmeasure solutiondegenerate diffusion-convection equationmulti-alleles genetic drift

Mathematics Subject Classification ID

Monte Carlo methods (65C05) Genetics and epigenetics (92D10) Population dynamics (general) (92D25) Finite difference methods for initial value and initial-boundary value problems involving PDEs (65M06) Numerical solution of discretized equations for boundary value problems involving PDEs (65N22) General biology and biomathematics (92B05)

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Cites work

• scientific article; zbMATH DE number 3148873 (Why is no real title available?)
• scientific article; zbMATH DE number 1375522 (Why is no real title available?)
• scientific article; zbMATH DE number 1455131 (Why is no real title available?)
• scientific article; zbMATH DE number 2152346 (Why is no real title available?)
• A Tri-Allelic Diffusion Model with Selection
• Behavior of different numerical schemes for random genetic drift
• Diffusion models in population genetics
• Fixation at a locus with multiple alleles: structure and solution of the Wright Fisher model
• Global-in-time weak measure solutions and finite-time aggregation for nonlocal interaction equations
• Monotonicity of control volume methods
• Numerical complete solution for random genetic drift by energetic variational approach
• The Differential Equation of the Distribution of Gene Frequencies
• The Filippov characteristic flow for the aggregation equation with mildly singular potentials

Cited in

(6)

• A non-local Fokker-Planck equation with application to probabilistic evaluation of sediment replenishment projects
• An optimal mass transport method for random genetic drift
• Behavior of different numerical schemes for random genetic drift
• Numerical complete solution for random genetic drift by energetic variational approach
• A boundary preserving numerical algorithm for the Wright-Fisher model with mutation
• Random collision model for random genetic drift and stochastic difference equation

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