Numerical method for multi-alleles genetic drift problem

DOI10.1137/18M1211581MaRDI QIDQ5232306zbMATH OpenOpenAlexFDO

Authors Shixin Xu, Xinfu Chen, Chun Liu, Xingye Yue

Publication date 2 September 2019

Published in SIAM Journal on Numerical Analysis (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1137/18m1211581

zbMATH Keywords

complete solutiondegenerate diffusion-convection equationfixationmeasure solutionmulti-alleles genetic drift

Mathematics Subject Classification ID

Monte Carlo methods (65C05) Finite difference methods for initial value and initial-boundary value problems involving PDEs (65M06) Numerical solution of discretized equations for boundary value problems involving PDEs (65N22) General biology and biomathematics (92B05) Genetics and epigenetics (92D10) Population dynamics (general) (92D25)

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Cites work

• A Tri-Allelic Diffusion Model with Selection
• Behavior of different numerical schemes for random genetic drift
• Diffusion models in population genetics
• Fixation at a locus with multiple alleles: structure and solution of the Wright Fisher model
• Global-in-time weak measure solutions and finite-time aggregation for nonlocal interaction equations
• scientific article; zbMATH DE number 3148873 (Why is no real title available?)
• scientific article; zbMATH DE number 1375522 (Why is no real title available?)
• scientific article; zbMATH DE number 1455131 (Why is no real title available?)
• scientific article; zbMATH DE number 2152346 (Why is no real title available?)
• Monotonicity of control volume methods
• Numerical complete solution for random genetic drift by energetic variational approach
• The Differential Equation of the Distribution of Gene Frequencies
• The Filippov characteristic flow for the aggregation equation with mildly singular potentials

Cited in

(7)

• Random collision model for random genetic drift and stochastic difference equation
• Behavior of different numerical schemes for random genetic drift
• A boundary preserving numerical algorithm for the Wright-Fisher model with mutation
• An optimal mass transport method for random genetic drift
• Numerical complete solution for random genetic drift by energetic variational approach
• A non-local Fokker-Planck equation with application to probabilistic evaluation of sediment replenishment projects
• A Positivity-Preserving Expectation Scheme for Hamilton--Jacobi--Bellman Equations with Oblique Robin Boundary Conditions

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