| Publication | Date of Publication | Type |
|---|
| Strong regulatory graphs | 2024-10-07 | Paper |
| CIRCULARITY AND OTHER INVARIANTS OF GENE ASSEMBLY IN CILIATES | 2022-12-06 | Paper |
| Algebraic systems and pushdown automata | 2022-04-28 | Paper |
| Controllability of reaction systems | 2021-09-14 | Paper |
| WEBRSIM: a web-based reaction systems simulator | 2019-01-15 | Paper |
| Reaction systems: a model of computation inspired by the functioning of the living cell | 2018-09-20 | Paper |
| Multi-Stability, Limit Cycles, and Period-Doubling Bifurcation with Reaction Systems | 2018-05-14 | Paper |
| A foundational framework for step-by-step model construction | 2018-01-19 | Paper |
| Dependency relations between elementary intramolecular operations in gene assembly in ciliates | 2016-12-16 | Paper |
| Complete characterization for the fit-preserving data refinement of mass-action reaction networks | 2016-07-15 | Paper |
| The structure of elementary strategies for gene assembly in ciliates | 2016-05-11 | Paper |
| Complexity of model checking for reaction systems | 2016-03-31 | Paper |
| An excursion through quantitative model refinement | 2016-02-26 | Paper |
| Dependency graphs and mass conservation in reaction systems | 2015-09-16 | Paper |
| Fit-preserving data refinement of mass-action reaction networks | 2015-02-25 | Paper |
| Reaction System Models for the Heat Shock Response | 2014-05-12 | Paper |
| Quantitative model refinement as a solution to the combinatorial size explosion of biomodels | 2014-03-21 | Paper |
| ODE Analysis of Biological Systems | 2013-06-28 | Paper |
| Self-assembly models of variable resolution | 2013-04-03 | Paper |
| Matrix insertion-deletion systems | 2012-10-11 | Paper |
| Simple gene assembly as a rewriting of directed overlap-inclusion graphs | 2012-10-11 | Paper |
| A Boolean approach for disentangling the roles of submodules to the global properties of a biomodel | 2012-06-20 | Paper |
| Preface | 2012-05-30 | Paper |
| Directed overlap-inclusion graphs as representations of ciliate genes | 2011-11-22 | Paper |
| Complexity-preserving simulations among three variants of accepting networks of evolutionary processors | 2011-05-23 | Paper |
| Three models for gene assembly in ciliates: a comparison | 2011-03-25 | Paper |
| Computational power of intramolecular gene assembly | 2011-01-06 | Paper |
| Computational heuristics for simplifying a biological model | 2010-07-28 | Paper |
| Computing the graph-based parallel complexity of gene assembly | 2010-05-27 | Paper |
| Accepting splicing systems | 2010-05-27 | Paper |
| Extended strings and graphs for simple gene assembly | 2010-02-09 | Paper |
| Periodic and Sturmian languages | 2010-01-18 | Paper |
| Gene assembly in ciliates. II. Formal frameworks. | 2009-09-15 | Paper |
| https://portal.mardi4nfdi.de/entity/Q3395981 | 2009-09-15 | Paper |
| Self-assembly of strings and languages | 2009-06-22 | Paper |
| The parallel complexity of signed graphs: Decidability results and an improved algorithm | 2009-06-04 | Paper |
| Aspects of Molecular Computing | 2009-05-14 | Paper |
| Simple Operations for Gene Assembly | 2009-04-02 | Paper |
| Graph theoretic approach to parallel gene assembly | 2009-03-04 | Paper |
| Computing Through Gene Assembly | 2009-02-17 | Paper |
| Decision problem for shuffled genes | 2008-12-03 | Paper |
| GENE ASSEMBLY MODELS AND BOOLEAN CIRCUITS | 2008-12-01 | Paper |
| Summary of the Workshop on Natural Computing and Graph Transformations | 2008-11-20 | Paper |
| Computational efficiency of intermolecular gene assembly | 2008-11-17 | Paper |
| Patterns of simple gene assembly in ciliates | 2008-10-17 | Paper |
| Solutions to computational problems through gene assembly | 2008-09-02 | Paper |
| Parallel complexity of signed graphs for gene assembly in ciliates | 2008-06-25 | Paper |
| Sequential vs. Parallel complexity in simple gene assembly | 2008-05-19 | Paper |
| Solutions to Computational Problems Through Gene Assembly | 2008-04-04 | Paper |
| Parikh matrices and amiable words | 2008-03-05 | Paper |
| A String-Based Model for Simple Gene Assembly | 2008-02-26 | Paper |
| Parallelism in gene assembly | 2007-04-19 | Paper |
| Simple gene assembly is deterministic | 2006-11-21 | Paper |
| DNA Computing | 2006-10-19 | Paper |
| Commutation with codes | 2005-08-01 | Paper |
| Computation in living cells. Gene assembly in ciliates | 2005-04-26 | Paper |
| Commutation with ternary sets of words | 2005-04-19 | Paper |
| https://portal.mardi4nfdi.de/entity/Q4668745 | 2005-04-15 | Paper |
| https://portal.mardi4nfdi.de/entity/Q4668746 | 2005-04-15 | Paper |
| https://portal.mardi4nfdi.de/entity/Q4665743 | 2005-04-11 | Paper |
| Theory Is Forever | 2005-01-18 | Paper |
| https://portal.mardi4nfdi.de/entity/Q4737667 | 2004-08-11 | Paper |
| https://portal.mardi4nfdi.de/entity/Q4738289 | 2004-08-11 | Paper |
| https://portal.mardi4nfdi.de/entity/Q4453221 | 2004-03-07 | Paper |
| https://portal.mardi4nfdi.de/entity/Q4438800 | 2003-12-10 | Paper |
| https://portal.mardi4nfdi.de/entity/Q4418638 | 2003-08-11 | Paper |
| Conway's problem and the commutation of languages. | 2003-02-04 | Paper |
| Formal systems for gene assembly in ciliates. | 2003-01-22 | Paper |
| Conway's problem for three-word sets. | 2003-01-21 | Paper |
| https://portal.mardi4nfdi.de/entity/Q4782120 | 2002-11-27 | Paper |
| Characterizing the micronuclear gene patterns in ciliates | 2002-09-25 | Paper |
| String and graph reduction systems for gene assembly in ciliates | 2002-09-11 | Paper |
| Recent results on the semilinear formal power series | 2002-01-14 | Paper |
| https://portal.mardi4nfdi.de/entity/Q2754174 | 2001-12-06 | Paper |
| On semilinearity in formal power series | 2001-04-04 | Paper |
| https://portal.mardi4nfdi.de/entity/Q4520789 | 2001-02-27 | Paper |
| https://portal.mardi4nfdi.de/entity/Q4267179 | 1999-09-22 | Paper |
| https://portal.mardi4nfdi.de/entity/Q4242719 | 1999-05-11 | Paper |
