| Publication | Date of Publication | Type |
|---|
| Multiset reaction systems | 2026-01-08 | Paper |
Strong regulatory graphs
Fundamenta Informaticae | 2024-10-07 | Paper |
CIRCULARITY AND OTHER INVARIANTS OF GENE ASSEMBLY IN CILIATES
Words, Semigroups, and Transductions | 2022-12-06 | Paper |
Algebraic systems and pushdown automata
Monographs in Theoretical Computer Science. An EATCS Series | 2022-04-28 | Paper |
Controllability of reaction systems
Journal of Membrane Computing | 2021-09-14 | Paper |
| WEBRSIM: a web-based reaction systems simulator | 2019-01-15 | Paper |
Reaction systems: a model of computation inspired by the functioning of the living cell
The Role of Theory in Computer Science | 2018-09-20 | Paper |
Multi-Stability, Limit Cycles, and Period-Doubling Bifurcation with Reaction Systems
International Journal of Foundations of Computer Science | 2018-05-14 | Paper |
A foundational framework for step-by-step model construction
Fundamenta Informaticae | 2018-01-19 | Paper |
| Dependency relations between elementary intramolecular operations in gene assembly in ciliates | 2016-12-16 | Paper |
Complete characterization for the fit-preserving data refinement of mass-action reaction networks
Theoretical Computer Science | 2016-07-15 | Paper |
The structure of elementary strategies for gene assembly in ciliates
Fundamenta Informaticae | 2016-05-11 | Paper |
Complexity of model checking for reaction systems
Theoretical Computer Science | 2016-03-31 | Paper |
An excursion through quantitative model refinement
Membrane Computing | 2016-02-26 | Paper |
Dependency graphs and mass conservation in reaction systems
Theoretical Computer Science | 2015-09-16 | Paper |
Fit-preserving data refinement of mass-action reaction networks
Language, Life, Limits | 2015-02-25 | Paper |
Reaction System Models for the Heat Shock Response
Fundamenta Informaticae | 2014-05-12 | Paper |
Quantitative model refinement as a solution to the combinatorial size explosion of biomodels
Electronic Notes in Theoretical Computer Science | 2014-03-21 | Paper |
ODE Analysis of Biological Systems
Lecture Notes in Computer Science | 2013-06-28 | Paper |
Self-assembly models of variable resolution
Lecture Notes in Computer Science | 2013-04-03 | Paper |
Matrix insertion-deletion systems
Theoretical Computer Science | 2012-10-11 | Paper |
Simple gene assembly as a rewriting of directed overlap-inclusion graphs
Theoretical Computer Science | 2012-10-11 | Paper |
A Boolean approach for disentangling the roles of submodules to the global properties of a biomodel
Fundamenta Informaticae | 2012-06-20 | Paper |
Preface
Theoretical Computer Science | 2012-05-30 | Paper |
Directed overlap-inclusion graphs as representations of ciliate genes
Fundamenta Informaticae | 2011-11-22 | Paper |
Complexity-preserving simulations among three variants of accepting networks of evolutionary processors
Natural Computing | 2011-05-23 | Paper |
Three models for gene assembly in ciliates: a comparison
Computer Science Journal of Moldova | 2011-03-25 | Paper |
Computational power of intramolecular gene assembly
International Journal of Foundations of Computer Science | 2011-01-06 | Paper |
Computational heuristics for simplifying a biological model
Mathematical Theory and Computational Practice | 2010-07-28 | Paper |
Computing the graph-based parallel complexity of gene assembly
Theoretical Computer Science | 2010-05-27 | Paper |
Accepting splicing systems
Theoretical Computer Science | 2010-05-27 | Paper |
Extended strings and graphs for simple gene assembly
Theoretical Computer Science | 2010-02-09 | Paper |
Periodic and Sturmian languages
Information Processing Letters | 2010-01-18 | Paper |
| Gene assembly in ciliates. II. Formal frameworks. | 2009-09-15 | Paper |
| scientific article; zbMATH DE number 5604098 (Why is no real title available?) | 2009-09-15 | Paper |
Self-assembly of strings and languages
Theoretical Computer Science | 2009-06-22 | Paper |
The parallel complexity of signed graphs: Decidability results and an improved algorithm
Theoretical Computer Science | 2009-06-04 | Paper |
Aspects of Molecular Computing
Lecture Notes in Computer Science | 2009-05-14 | Paper |
Simple Operations for Gene Assembly
DNA Computing | 2009-04-02 | Paper |
Graph theoretic approach to parallel gene assembly
Discrete Applied Mathematics | 2009-03-04 | Paper |
Computing Through Gene Assembly
Lecture Notes in Computer Science | 2009-02-17 | Paper |
Decision problem for shuffled genes
Information and Computation | 2008-12-03 | Paper |
GENE ASSEMBLY MODELS AND BOOLEAN CIRCUITS
International Journal of Foundations of Computer Science | 2008-12-01 | Paper |
Summary of the Workshop on Natural Computing and Graph Transformations
Lecture Notes in Computer Science | 2008-11-20 | Paper |
| Computational efficiency of intermolecular gene assembly | 2008-11-17 | Paper |
Patterns of simple gene assembly in ciliates
Discrete Applied Mathematics | 2008-10-17 | Paper |
Solutions to computational problems through gene assembly
Natural Computing | 2008-09-02 | Paper |
Parallel complexity of signed graphs for gene assembly in ciliates
Soft Computing | 2008-06-25 | Paper |
Sequential vs. Parallel complexity in simple gene assembly
Theoretical Computer Science | 2008-05-19 | Paper |
Solutions to Computational Problems Through Gene Assembly
DNA Computing | 2008-04-04 | Paper |
Parikh matrices and amiable words
Theoretical Computer Science | 2008-03-05 | Paper |
A String-Based Model for Simple Gene Assembly
Fundamentals of Computation Theory | 2008-02-26 | Paper |
Parallelism in gene assembly
Natural Computing | 2007-04-19 | Paper |
| Simple gene assembly is deterministic | 2006-11-21 | Paper |
DNA Computing
Lecture Notes in Computer Science | 2006-10-19 | Paper |
Commutation with codes
Theoretical Computer Science | 2005-08-01 | Paper |
Computation in living cells. Gene assembly in ciliates
Natural Computing Series | 2005-04-26 | Paper |
Commutation with ternary sets of words
Theory of Computing Systems | 2005-04-19 | Paper |
| scientific article; zbMATH DE number 2156287 (Why is no real title available?) | 2005-04-15 | Paper |
| scientific article; zbMATH DE number 2156288 (Why is no real title available?) | 2005-04-15 | Paper |
| scientific article; zbMATH DE number 2155196 (Why is no real title available?) | 2005-04-11 | Paper |
Theory Is Forever
Lecture Notes in Computer Science | 2005-01-18 | Paper |
| scientific article; zbMATH DE number 2087027 (Why is no real title available?) | 2004-08-11 | Paper |
| scientific article; zbMATH DE number 2087489 (Why is no real title available?) | 2004-08-11 | Paper |
| scientific article; zbMATH DE number 2050946 (Why is no real title available?) | 2004-03-07 | Paper |
| scientific article; zbMATH DE number 2016091 (Why is no real title available?) | 2003-12-10 | Paper |
| scientific article; zbMATH DE number 1962803 (Why is no real title available?) | 2003-08-11 | Paper |
Conway's problem and the commutation of languages.
Bulletin of the European Association for Theoretical Computer Science EATCS | 2003-02-04 | Paper |
Formal systems for gene assembly in ciliates.
Theoretical Computer Science | 2003-01-22 | Paper |
Conway's problem for three-word sets.
Theoretical Computer Science | 2003-01-21 | Paper |
| scientific article; zbMATH DE number 1836434 (Why is no real title available?) | 2002-11-27 | Paper |
Characterizing the micronuclear gene patterns in ciliates
Theory of Computing Systems | 2002-09-25 | Paper |
String and graph reduction systems for gene assembly in ciliates
Mathematical Structures in Computer Science | 2002-09-11 | Paper |
Recent results on the semilinear formal power series
Bulletin of the Belgian Mathematical Society - Simon Stevin | 2002-01-14 | Paper |
| scientific article; zbMATH DE number 1670850 (Why is no real title available?) | 2001-12-06 | Paper |
| On semilinearity in formal power series | 2001-04-04 | Paper |
| scientific article; zbMATH DE number 1543318 (Why is no real title available?) | 2001-02-27 | Paper |
| scientific article; zbMATH DE number 1343487 (Why is no real title available?) | 1999-09-22 | Paper |
| scientific article; zbMATH DE number 1286205 (Why is no real title available?) | 1999-05-11 | Paper |
