Protein structure comparison: algorithms and applications

DOI10.1007/978-3-540-44827-3_1MaRDI QIDQ3158109zbMATH OpenFDO

Authors Giuseppe Lancia, Sorin Istrail

Publication date 20 January 2005

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-540-44827-3_1

zbMATH Keywords

contact mapsgenetic algorithms

Mathematics Subject Classification ID

Applications of graph theory (05C90) Software, source code, etc. for problems pertaining to biology (92-04) Computational methods for problems pertaining to biology (92-08) Biochemistry, molecular biology (92C40)

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Cited in

(26)

• Comparative protein structure modeling in genomics
• A differential geometric treatment of protein structure comparison
• A novel algorithm for macromolecular epitope matching
• On the reconstruction of three-dimensional protein structures from contact maps
• A fuzzy sets based generalization of contact maps for the overlap of protein structures
• Comparison of TOPS strings based on LZ complexity
• Comparison of two algorithms of direct coupling analysis of protein
• Revisiting chameleon sequences in the protein data bank
• Exploring the limits of fold discrimination by structural alignment: a large scale benchmark using decoys of known fold
• Constant time approximation scheme for largest well predicted subset
• Spatial pattern detection in structural bioinformatics
• Geometric methods for protein structure comparison
• A comparison of methods for assessing the structural similarity of proteins
• Finding Largest Well-Predicted Subset of Protein Structure Models
• A Branch-and-Reduce Algorithm for the Contact Map Overlap Problem
• A Parameterized Algorithm for Protein Structure Alignment
• Comparing 3-D protein structure similarity by using geometric invariants
• On protein structure alignment under distance constraint
• Finding the consensus shape for a protein family
• 3D-hit: fast structural comparison of proteins on multicore architectures
• Invariant features for searching in protein fold databases
• scientific article; zbMATH DE number 5262721 (Why is no real title available?)
• On protein structure alignment under distance constraint
• scientific article; zbMATH DE number 2209353 (Why is no real title available?)
• RMSD calculations for comparing protein three-dimensional structures
• Recognition of structure similarities in proteins

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