Extensions of sparse canonical correlation analysis with applications to genomic data

DOI10.2202/1544-6115.1470zbMATH Open1276.62099OpenAlexW2008929650WikidataQ33477584 ScholiaQ33477584MaRDI QIDQ140840FDOQ140840

Authors: Daniela M. Witten, Robert Tibshirani 

Publication date: 9 January 2009

Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL: http://europepmc.org/articles/pmc2861323

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zbMATH Keywords

lassoDNA copy numberSNPCGHfused lassogene expressionmicroarraysparse canonical correlation analysis

Mathematics Subject Classification ID

Factor analysis and principal components; correspondence analysis (62H25) Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

Cited In (41)

• Canonical correlation analysis for elliptical copulas
• A general framework for penalized mixed-effects multitask learning with applications on DNA methylation surrogate biomarkers creation
• Certifiably optimal sparse principal component analysis
• Ensemble sparse estimation of covariance structure for exploring genetic disease data
• Highlighting relationships between heterogeneous biological data through graphical displays based on regularized canonical correlation analysis
• Principal trend analysis for time-course data with applications in genomic medicine
• Joint and individual variation explained (JIVE) for integrated analysis of multiple data types
• Eigenvector-based sparse canonical correlation analysis: fast computation for estimation of multiple canonical vectors
• Joint association and classification analysis of multi‐view data
• Sparse principal component based high-dimensional mediation analysis
• Robust multivariate association and dimension reduction using density divergences
• PCAN: probabilistic correlation analysis of two non-normal data sets
• Data Integration in High Dimension With Multiple Quantiles
• Robust rank canonical correlation analysis for multivariate survival data
• Integrative clustering methods for multi-omics data
• Trace Lasso regularization for adaptive sparse canonical correlation analysis via manifold optimization approach
• Sparse canonical correlation analysis with application to genomic data integration
• Sparse common component analysis for multiple high-dimensional datasets via noncentered principal component analysis
• Fast Algorithms for LS and LAD-Collaborative Regression
• Quantifying the association between gene expressions and DNA-markers by penalized canonical correlation analysis
• Sparse multiway canonical correlation analysis for multimodal stroke recovery data
• Continuum directions for supervised dimension reduction
• Integrative analysis of transcriptomic and metabolomic data via sparse canonical correlation analysis with incorporation of biological information
• PMA
• Resistant multiple sparse canonical correlation
• Dimension-wise sparse low-rank approximation of a matrix with application to variable selection in high-dimensional integrative analyzes of association
• sJIVE: supervised joint and individual variation explained
• Minimax Quasi-Bayesian Estimation in Sparse Canonical Correlation Analysis via a Rayleigh Quotient Function
• Genome-wide association studies with high-dimensional phenotypes
• Sparse canonical covariance analysis for high-throughput data
• Sparse integrative clustering of multiple omics data sets
• Sparse linear discriminant analysis for multiview structured data
• Surrogate modeling of high-dimensional problems via data-driven polynomial chaos expansions and sparse partial least square
• Local kernel canonical correlation analysis with application to virtual drug screening
• Canonical correlation analysis in high dimensions with structured regularization
• Inferring gene-gene interactions and functional modules using sparse canonical correlation analysis
• Kernel generalized canonical correlation analysis
• Identification of supervised and sparse functional genomic pathways
• High-dimensional variable screening under multicollinearity
• Tensor canonical correlation analysis
• A global \(\times\) global test for testing associations between two large sets of variables

Uses Software

• PMA

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