Simulation-based Bayesian inference for epidemic models
From MaRDI portal
Publication:1621323
DOI10.1016/j.csda.2012.12.012zbMath1471.62137OpenAlexW2037740528WikidataQ56775136 ScholiaQ56775136MaRDI QIDQ1621323
Rob Deardon, Alex R. Cook, Joshua V. Ross, Trevelyan J. McKinley
Publication date: 8 November 2018
Published in: Computational Statistics and Data Analysis (Search for Journal in Brave)
Full work available at URL: http://hdl.handle.net/10871/20637
Computational methods for problems pertaining to statistics (62-08) Epidemiology (92D30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Bayesian inference (62F15)
Related Items (20)
Efficient MCMC for temporal epidemics via parameter reduction ⋮ Direct statistical inference for finite Markov jump processes via the matrix exponential ⋮ An approximate likelihood perspective on ABC methods ⋮ Gaussian process approximations for fast inference from infectious disease data ⋮ Model choice problems using approximate Bayesian computation with applications to pathogen transmission data sets ⋮ Stability of noisy Metropolis-Hastings ⋮ Correlated pseudo-marginal schemes for time-discretised stochastic kinetic models ⋮ Accelerating Bayesian inference for stochastic epidemic models using incidence data ⋮ Approximate Bayesian Computation: A Survey on Recent Results ⋮ Accelerating inference for stochastic kinetic models ⋮ A rare event approach to high-dimensional approximate Bayesian computation ⋮ Efficient Bayesian model choice for partially observed processes: with application to an experimental transmission study of an infectious disease ⋮ Calibration of Population Growth Mathematical Models by Using Time Series ⋮ Approximate Bayesian computation and simulation-based inference for complex stochastic epidemic models ⋮ Bayesian model discrimination for partially-observed epidemic models ⋮ Bayesian inference for multistrain epidemics with application to \textit{Escherichia coli} O157:H7 in feedlot cattle ⋮ Efficient \(\mathrm{SMC}^2\) schemes for stochastic kinetic models ⋮ Importance sampling for partially observed temporal epidemic models ⋮ Efficient sampling of conditioned Markov jump processes ⋮ Forward Simulation Markov Chain Monte Carlo with Applications to Stochastic Epidemic Models
Uses Software
Cites Work
- Unnamed Item
- Unnamed Item
- Unnamed Item
- Unnamed Item
- Unnamed Item
- Unnamed Item
- Unnamed Item
- Unnamed Item
- Reversible jump Markov chain Monte Carlo computation and Bayesian model determination
- The pseudo-marginal approach for efficient Monte Carlo computations
- Approximate Bayesian computing for spatial extremes
- On parameter estimation in population models
- Modeling computer virus prevalence with a susceptible-infected-susceptible model with reintroduction
- Iterated importance sampling in missing data problems
- A data-augmentation method for infectious disease incidence data from close contact groups
- RLadyBug -- an R package for stochastic epidemic models
- Bayesian inference for stochastic epidemic models with time-inhomogeneous removal rates
- Sequential Monte Carlo Methods in Practice
- HIV with contact tracing: a case study in approximate Bayesian computation
- Adaptive approximate Bayesian computation
- A unified approach to the distribution of total size and total area under the trajectory of infectives in epidemic models
- Inference for an epidemic when susceptibility varies
- Analyses of Infectious Disease Data from Household Outbreaks by Markov Chain Monte Carlo Methods
- Particle Markov Chain Monte Carlo Methods
- Constructing Summary Statistics for Approximate Bayesian Computation: Semi-Automatic Approximate Bayesian Computation
- Exact Filtering for Partially Observed Continuous Time Models
- Equation of State Calculations by Fast Computing Machines
- Sequential Monte Carlo without likelihoods
- Bayesian inference for epidemics with two levels of mixing
- Bayesian Inference for Stochastic Multitype Epidemics in Structured Populations Via Random Graphs
- Monte Carlo sampling methods using Markov chains and their applications
- An adaptive Metropolis algorithm
- Bayesian analysis for emerging infectious diseases
This page was built for publication: Simulation-based Bayesian inference for epidemic models
