Quantifying heterogeneity of stochastic gene expression

DOI10.1101/316166MaRDI QIDQ1721791zbMATH OpenOpenAlexWikidataFDO

Authors Keita Iida, Nobuaki Obata, Yoshitaka Kimura

Publication date 13 February 2019

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2019.01.003

zbMATH Keywords

Metropolis algorithmmaster equationstochastic process\textit{lac} operon

Mathematics Subject Classification ID

Stochastic partial differential equations (aspects of stochastic analysis) (60H15) Biochemistry, molecular biology (92C40) PDEs in connection with biology, chemistry and other natural sciences (35Q92)

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Cites work

• scientific article; zbMATH DE number 48388 (Why is no real title available?)
• A general mechanism for network-dosage compensation in gene circuits
• A geometric analysis of fast-slow models for stochastic gene expression
• Deterministic and stochastic descriptions of gene expression dynamics
• Equation of state calculations by fast computing machines
• Exact and approximate distributions of protein and mRNA levels in the low-copy regime of gene expression
• Generalized Fokker-Planck equation: derivation and exact solutions
• Markovian modelling of gene product synthesis
• Relative convexity and its applications
• Using gene expression noise to understand gene regulation

Cited in

(5)

• Optimisation of gene expression noise for cellular persistence against lethal events
• Dynamics of gene regulatory networks with stochastic propensities
• \textit{A priori}, \textit{de novo} mathematical exploration of gene expression mechanism via regression viewpoint with briefly cataloged modeling antiquity
• ON THE RELATION BETWEEN FLUCTUATION AND SCALING-LAW IN GENE EXPRESSION TIME SERIES FROM YEAST TO HUMAN
• Quantifying intrinsic and extrinsic noise in gene transcription using the linear noise approximation: an application to single cell data

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